Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.06■□□□□ 0.48
SOX3P41225 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.06■□□□□ 0.48
SOX3P41225 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SOX3P41225 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SOX3P41225 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SOX3P41225 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX3P41225 NEFHP1-201ENST00000412845 2629 ntBASIC18.05■□□□□ 0.48
SOX3P41225 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX3P41225 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SOX3P41225 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 TUBB8P6-201ENST00000436895 1288 ntBASIC18.05■□□□□ 0.48
SOX3P41225 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.05■□□□□ 0.48
SOX3P41225 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX3P41225 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.05■□□□□ 0.48
SOX3P41225 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.05■□□□□ 0.48
SOX3P41225 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
SOX3P41225 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX3P41225 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.05■□□□□ 0.48
SOX3P41225 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
SOX3P41225 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.04■□□□□ 0.48
SOX3P41225 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.04■□□□□ 0.48
SOX3P41225 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.04■□□□□ 0.48
SOX3P41225 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX3P41225 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX3P41225 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX3P41225 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
SOX3P41225 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SOX3P41225 FAM197Y1-201ENST00000421178 764 ntBASIC18.04■□□□□ 0.48
SOX3P41225 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.04■□□□□ 0.48
SOX3P41225 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.04■□□□□ 0.48
SOX3P41225 C1QL1P1-201ENST00000568105 661 ntBASIC18.04■□□□□ 0.48
SOX3P41225 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.04■□□□□ 0.48
SOX3P41225 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.04■□□□□ 0.48
SOX3P41225 AC073195.1-201ENST00000607241 877 ntBASIC18.04■□□□□ 0.48
SOX3P41225 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.04■□□□□ 0.48
SOX3P41225 TMEM179-206ENST00000616017 1645 ntBASIC18.04■□□□□ 0.48
SOX3P41225 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
SOX3P41225 AC120498.9-201ENST00000339021 3867 ntBASIC18.04■□□□□ 0.48
SOX3P41225 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SOX3P41225 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SOX3P41225 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.04■□□□□ 0.48
SOX3P41225 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SOX3P41225 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SOX3P41225 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SOX3P41225 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX3P41225 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SOX3P41225 AC093503.3-201ENST00000624917 2352 ntBASIC18.03■□□□□ 0.48
SOX3P41225 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SOX3P41225 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.03■□□□□ 0.48
SOX3P41225 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.03■□□□□ 0.48
SOX3P41225 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX3P41225 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.03■□□□□ 0.48
SOX3P41225 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.03■□□□□ 0.48
SOX3P41225 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.03■□□□□ 0.48
SOX3P41225 CD177P1-201ENST00000606252 935 ntBASIC18.03■□□□□ 0.48
SOX3P41225 AL353708.3-201ENST00000610272 989 ntBASIC18.03■□□□□ 0.48
SOX3P41225 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SOX3P41225 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX3P41225 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX3P41225 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.03■□□□□ 0.48
SOX3P41225 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SOX3P41225 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SOX3P41225 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SOX3P41225 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.02■□□□□ 0.48
SOX3P41225 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.02■□□□□ 0.48
SOX3P41225 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.02■□□□□ 0.48
SOX3P41225 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SOX3P41225 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.02■□□□□ 0.48
SOX3P41225 NIFKP9-201ENST00000419265 221 ntBASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms