Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC25.41■■□□□ 1.66
COL18A1P39060 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL18A1P39060 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL18A1P39060 GAS2L1P1-201ENST00000420145 1480 ntBASIC25.41■■□□□ 1.66
COL18A1P39060 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
COL18A1P39060 CHCHD2P8-201ENST00000429873 447 ntBASIC25.41■■□□□ 1.66
COL18A1P39060 AC079781.3-201ENST00000449110 356 ntBASIC25.41■■□□□ 1.66
COL18A1P39060 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC25.41■■□□□ 1.66
COL18A1P39060 KLK8-205ENST00000593490 267 ntTSL 3 BASIC25.41■■□□□ 1.66
COL18A1P39060 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC25.41■■□□□ 1.66
COL18A1P39060 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL18A1P39060 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL18A1P39060 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC25.4■■□□□ 1.66
COL18A1P39060 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
COL18A1P39060 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
COL18A1P39060 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL18A1P39060 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC25.4■■□□□ 1.66
COL18A1P39060 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL18A1P39060 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC25.4■■□□□ 1.66
COL18A1P39060 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC25.4■■□□□ 1.66
COL18A1P39060 AL157888.1-201ENST00000631930 593 ntBASIC25.4■■□□□ 1.66
COL18A1P39060 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
COL18A1P39060 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
COL18A1P39060 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
COL18A1P39060 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
COL18A1P39060 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC25.39■■□□□ 1.66
COL18A1P39060 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC25.39■■□□□ 1.66
COL18A1P39060 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
COL18A1P39060 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
COL18A1P39060 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
COL18A1P39060 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
COL18A1P39060 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.65
COL18A1P39060 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
COL18A1P39060 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.65
COL18A1P39060 AC004870.1-201ENST00000315132 882 ntBASIC25.39■■□□□ 1.65
COL18A1P39060 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.65
COL18A1P39060 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC25.39■■□□□ 1.65
COL18A1P39060 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
COL18A1P39060 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC25.38■■□□□ 1.65
COL18A1P39060 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
COL18A1P39060 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC25.38■■□□□ 1.65
COL18A1P39060 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
COL18A1P39060 AP002414.4-201ENST00000589764 1148 ntBASIC25.38■■□□□ 1.65
COL18A1P39060 AC024243.1-201ENST00000609234 778 ntBASIC25.38■■□□□ 1.65
COL18A1P39060 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
COL18A1P39060 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC25.38■■□□□ 1.65
COL18A1P39060 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC25.38■■□□□ 1.65
COL18A1P39060 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC25.37■■□□□ 1.65
COL18A1P39060 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL18A1P39060 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL18A1P39060 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL18A1P39060 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC25.37■■□□□ 1.65
COL18A1P39060 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC25.37■■□□□ 1.65
COL18A1P39060 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC25.37■■□□□ 1.65
COL18A1P39060 MIR3180-5-201ENST00000583743 153 ntBASIC25.37■■□□□ 1.65
COL18A1P39060 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
COL18A1P39060 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL18A1P39060 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
COL18A1P39060 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
COL18A1P39060 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC25.37■■□□□ 1.65
COL18A1P39060 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL18A1P39060 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
COL18A1P39060 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC25.37■■□□□ 1.65
COL18A1P39060 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC25.37■■□□□ 1.65
COL18A1P39060 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
COL18A1P39060 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL18A1P39060 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
COL18A1P39060 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC25.36■■□□□ 1.65
COL18A1P39060 EMBP1-201ENST00000458200 901 ntBASIC25.36■■□□□ 1.65
COL18A1P39060 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC25.36■■□□□ 1.65
COL18A1P39060 KRT8P26-201ENST00000534154 1276 ntBASIC25.36■■□□□ 1.65
COL18A1P39060 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC25.36■■□□□ 1.65
COL18A1P39060 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
COL18A1P39060 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC25.36■■□□□ 1.65
COL18A1P39060 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL18A1P39060 AL023284.2-201ENST00000405850 579 ntBASIC25.36■■□□□ 1.65
COL18A1P39060 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC25.36■■□□□ 1.65
COL18A1P39060 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
COL18A1P39060 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
COL18A1P39060 SPEG-225ENST00000617028 815 ntTSL 5 BASIC25.36■■□□□ 1.65
COL18A1P39060 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC25.36■■□□□ 1.65
COL18A1P39060 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC25.36■■□□□ 1.65
COL18A1P39060 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC25.36■■□□□ 1.65
COL18A1P39060 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL18A1P39060 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL18A1P39060 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL18A1P39060 SDHAP1-207ENST00000440850 2000 ntBASIC25.35■■□□□ 1.65
COL18A1P39060 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC25.35■■□□□ 1.65
COL18A1P39060 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC25.35■■□□□ 1.65
COL18A1P39060 RNF126P1-202ENST00000569893 925 ntBASIC25.35■■□□□ 1.65
COL18A1P39060 AC023511.2-201ENST00000618803 211 ntBASIC25.35■■□□□ 1.65
COL18A1P39060 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC25.35■■□□□ 1.65
COL18A1P39060 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL18A1P39060 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL18A1P39060 KRT18P1-202ENST00000452408 1331 ntBASIC25.35■■□□□ 1.65
COL18A1P39060 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL18A1P39060 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL18A1P39060 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC25.34■■□□□ 1.65
COL18A1P39060 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL18A1P39060 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC25.34■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms