Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SHMT2P34897 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.8■□□□□ 0.6
SHMT2P34897 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHMT2P34897 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SHMT2P34897 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.8■□□□□ 0.6
SHMT2P34897 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.79■□□□□ 0.6
SHMT2P34897 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.79■□□□□ 0.6
SHMT2P34897 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
SHMT2P34897 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.79■□□□□ 0.6
SHMT2P34897 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.79■□□□□ 0.6
SHMT2P34897 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 NUDT16P1-203ENST00000513809 620 ntBASIC18.79■□□□□ 0.6
SHMT2P34897 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.79■□□□□ 0.6
SHMT2P34897 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
SHMT2P34897 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.79■□□□□ 0.6
SHMT2P34897 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
SHMT2P34897 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHMT2P34897 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SHMT2P34897 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SHMT2P34897 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SHMT2P34897 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.78■□□□□ 0.6
SHMT2P34897 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.78■□□□□ 0.6
SHMT2P34897 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.78■□□□□ 0.6
SHMT2P34897 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.78■□□□□ 0.6
SHMT2P34897 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.78■□□□□ 0.6
SHMT2P34897 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.78■□□□□ 0.6
SHMT2P34897 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SHMT2P34897 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SHMT2P34897 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.78■□□□□ 0.6
SHMT2P34897 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.78■□□□□ 0.6
SHMT2P34897 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.78■□□□□ 0.6
SHMT2P34897 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SHMT2P34897 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHMT2P34897 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.78■□□□□ 0.6
SHMT2P34897 AC005332.7-201ENST00000614046 2005 ntBASIC18.78■□□□□ 0.6
SHMT2P34897 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHMT2P34897 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.77■□□□□ 0.6
SHMT2P34897 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.77■□□□□ 0.6
SHMT2P34897 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.77■□□□□ 0.6
SHMT2P34897 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHMT2P34897 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.77■□□□□ 0.6
SHMT2P34897 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.77■□□□□ 0.6
SHMT2P34897 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.77■□□□□ 0.6
SHMT2P34897 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SHMT2P34897 AC004980.1-204ENST00000429707 299 ntBASIC18.77■□□□□ 0.6
SHMT2P34897 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.77■□□□□ 0.6
SHMT2P34897 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
SHMT2P34897 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHMT2P34897 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.77■□□□□ 0.6
SHMT2P34897 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.77■□□□□ 0.59
SHMT2P34897 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SHMT2P34897 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.76■□□□□ 0.59
SHMT2P34897 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.76■□□□□ 0.59
SHMT2P34897 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
SHMT2P34897 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
SHMT2P34897 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHMT2P34897 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.76■□□□□ 0.59
SHMT2P34897 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SHMT2P34897 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms