Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.95■□□□□ 0.78
HMGA1P17096 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.95■□□□□ 0.78
HMGA1P17096 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.95■□□□□ 0.78
HMGA1P17096 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGA1P17096 AC008622.2-201ENST00000617006 1229 ntBASIC19.95■□□□□ 0.78
HMGA1P17096 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
HMGA1P17096 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGA1P17096 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HMGA1P17096 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HMGA1P17096 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGA1P17096 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGA1P17096 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGA1P17096 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGA1P17096 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGA1P17096 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGA1P17096 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGA1P17096 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.94■□□□□ 0.78
HMGA1P17096 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.94■□□□□ 0.78
HMGA1P17096 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGA1P17096 AL441883.1-201ENST00000566170 1045 ntBASIC19.94■□□□□ 0.78
HMGA1P17096 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGA1P17096 AL023973.1-201ENST00000624619 620 ntBASIC19.94■□□□□ 0.78
HMGA1P17096 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGA1P17096 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.94■□□□□ 0.78
HMGA1P17096 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGA1P17096 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
HMGA1P17096 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGA1P17096 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HMGA1P17096 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGA1P17096 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.94■□□□□ 0.78
HMGA1P17096 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
HMGA1P17096 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HMGA1P17096 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.94■□□□□ 0.78
HMGA1P17096 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HMGA1P17096 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.93■□□□□ 0.78
HMGA1P17096 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGA1P17096 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGA1P17096 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGA1P17096 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGA1P17096 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGA1P17096 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.93■□□□□ 0.78
HMGA1P17096 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.93■□□□□ 0.78
HMGA1P17096 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGA1P17096 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGA1P17096 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HMGA1P17096 LINC01238-205ENST00000567549 1107 ntBASIC19.93■□□□□ 0.78
HMGA1P17096 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.93■□□□□ 0.78
HMGA1P17096 AL031432.5-201ENST00000641059 760 ntBASIC19.93■□□□□ 0.78
HMGA1P17096 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGA1P17096 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.93■□□□□ 0.78
HMGA1P17096 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGA1P17096 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HMGA1P17096 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGA1P17096 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGA1P17096 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGA1P17096 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGA1P17096 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.92■□□□□ 0.78
HMGA1P17096 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.92■□□□□ 0.78
HMGA1P17096 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.92■□□□□ 0.78
HMGA1P17096 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.92■□□□□ 0.78
HMGA1P17096 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGA1P17096 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGA1P17096 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGA1P17096 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGA1P17096 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
HMGA1P17096 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HMGA1P17096 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
HMGA1P17096 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
HMGA1P17096 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
HMGA1P17096 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.91■□□□□ 0.78
HMGA1P17096 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGA1P17096 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.91■□□□□ 0.78
HMGA1P17096 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 AL031133.1-201ENST00000406807 723 ntBASIC19.91■□□□□ 0.78
HMGA1P17096 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGA1P17096 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.91■□□□□ 0.78
HMGA1P17096 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.91■□□□□ 0.78
HMGA1P17096 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.91■□□□□ 0.78
HMGA1P17096 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.91■□□□□ 0.78
HMGA1P17096 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
HMGA1P17096 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.91■□□□□ 0.78
HMGA1P17096 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
HMGA1P17096 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
HMGA1P17096 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HMGA1P17096 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGA1P17096 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.9■□□□□ 0.78
HMGA1P17096 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
HMGA1P17096 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGA1P17096 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGA1P17096 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGA1P17096 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms