Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
VCANP13611 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.89■□□□□ 0.77
VCANP13611 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.89■□□□□ 0.77
VCANP13611 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.89■□□□□ 0.77
VCANP13611 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.89■□□□□ 0.77
VCANP13611 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.89■□□□□ 0.77
VCANP13611 SPCS2P1-201ENST00000561636 679 ntBASIC19.89■□□□□ 0.77
VCANP13611 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.89■□□□□ 0.77
VCANP13611 AC104109.2-201ENST00000602919 1418 ntBASIC19.89■□□□□ 0.77
VCANP13611 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.88■□□□□ 0.77
VCANP13611 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCANP13611 SEC1P-202ENST00000473944 940 ntBASIC19.88■□□□□ 0.77
VCANP13611 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
VCANP13611 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.88■□□□□ 0.77
VCANP13611 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.88■□□□□ 0.77
VCANP13611 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
VCANP13611 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCANP13611 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.88■□□□□ 0.77
VCANP13611 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCANP13611 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCANP13611 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VCANP13611 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCANP13611 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCANP13611 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VCANP13611 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCANP13611 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCANP13611 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.87■□□□□ 0.77
VCANP13611 MIR1199-201ENST00000621445 119 ntBASIC19.87■□□□□ 0.77
VCANP13611 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VCANP13611 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCANP13611 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.87■□□□□ 0.77
VCANP13611 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 AC018712.1-201ENST00000455767 687 ntBASIC19.87■□□□□ 0.77
VCANP13611 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.87■□□□□ 0.77
VCANP13611 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.87■□□□□ 0.77
VCANP13611 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.87■□□□□ 0.77
VCANP13611 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VCANP13611 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
VCANP13611 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
VCANP13611 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
VCANP13611 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.86■□□□□ 0.77
VCANP13611 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
VCANP13611 AC211486.1-202ENST00000416371 468 ntBASIC19.86■□□□□ 0.77
VCANP13611 AP006288.1-201ENST00000446065 395 ntBASIC19.86■□□□□ 0.77
VCANP13611 AC211476.1-201ENST00000503899 468 ntBASIC19.86■□□□□ 0.77
VCANP13611 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VCANP13611 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.86■□□□□ 0.77
VCANP13611 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.86■□□□□ 0.77
VCANP13611 AL049840.3-201ENST00000602669 611 ntBASIC19.86■□□□□ 0.77
VCANP13611 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
VCANP13611 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
VCANP13611 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.86■□□□□ 0.77
VCANP13611 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.86■□□□□ 0.77
VCANP13611 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.86■□□□□ 0.77
VCANP13611 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.86■□□□□ 0.77
VCANP13611 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VCANP13611 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.85■□□□□ 0.77
VCANP13611 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VCANP13611 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
VCANP13611 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCANP13611 AC093525.10-201ENST00000625130 1569 ntBASIC19.85■□□□□ 0.77
VCANP13611 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCANP13611 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCANP13611 RPS8P6-201ENST00000426177 609 ntBASIC19.85■□□□□ 0.77
VCANP13611 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.85■□□□□ 0.77
VCANP13611 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCANP13611 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.85■□□□□ 0.77
VCANP13611 RNF126P1-202ENST00000569893 925 ntBASIC19.85■□□□□ 0.77
VCANP13611 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VCANP13611 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCANP13611 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VCANP13611 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VCANP13611 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms