Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 PRORSD1P-201ENST00000295112 541 ntBASIC22.65■■□□□ 1.22
HMGB1P09429 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC22.65■■□□□ 1.22
HMGB1P09429 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 AC004980.1-204ENST00000429707 299 ntBASIC22.65■■□□□ 1.22
HMGB1P09429 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 PPP1R14BP5-201ENST00000440334 435 ntBASIC22.65■■□□□ 1.22
HMGB1P09429 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
HMGB1P09429 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC22.65■■□□□ 1.22
HMGB1P09429 FDX2-207ENST00000494368 584 ntTSL 4 BASIC22.65■■□□□ 1.22
HMGB1P09429 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC22.65■■□□□ 1.22
HMGB1P09429 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC22.65■■□□□ 1.22
HMGB1P09429 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.65■■□□□ 1.22
HMGB1P09429 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.65■■□□□ 1.22
HMGB1P09429 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC22.65■■□□□ 1.22
HMGB1P09429 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
HMGB1P09429 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC22.65■■□□□ 1.22
HMGB1P09429 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC22.65■■□□□ 1.22
HMGB1P09429 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
HMGB1P09429 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
HMGB1P09429 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
HMGB1P09429 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
HMGB1P09429 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
HMGB1P09429 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
HMGB1P09429 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
HMGB1P09429 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC22.64■■□□□ 1.22
HMGB1P09429 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
HMGB1P09429 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
HMGB1P09429 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
HMGB1P09429 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
HMGB1P09429 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC22.64■■□□□ 1.21
HMGB1P09429 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC22.64■■□□□ 1.21
HMGB1P09429 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
HMGB1P09429 AF186192.3-201ENST00000583427 947 ntBASIC22.64■■□□□ 1.21
HMGB1P09429 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC22.64■■□□□ 1.21
HMGB1P09429 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC22.64■■□□□ 1.21
HMGB1P09429 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC22.64■■□□□ 1.21
HMGB1P09429 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HMGB1P09429 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
HMGB1P09429 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
HMGB1P09429 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 AL049812.1-201ENST00000432563 2267 ntBASIC22.63■■□□□ 1.21
HMGB1P09429 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC22.63■■□□□ 1.21
HMGB1P09429 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
HMGB1P09429 TSPY23P-201ENST00000440136 739 ntBASIC22.63■■□□□ 1.21
HMGB1P09429 RPS2P4-201ENST00000476944 856 ntBASIC22.63■■□□□ 1.21
HMGB1P09429 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.63■■□□□ 1.21
HMGB1P09429 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC22.63■■□□□ 1.21
HMGB1P09429 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC22.63■■□□□ 1.21
HMGB1P09429 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC22.63■■□□□ 1.21
HMGB1P09429 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC22.63■■□□□ 1.21
HMGB1P09429 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC22.63■■□□□ 1.21
HMGB1P09429 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC22.63■■□□□ 1.21
HMGB1P09429 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 AL135905.2-201ENST00000584934 1404 ntBASIC22.63■■□□□ 1.21
HMGB1P09429 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HMGB1P09429 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
HMGB1P09429 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 GAS2L1P1-201ENST00000420145 1480 ntBASIC22.62■■□□□ 1.21
HMGB1P09429 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.62■■□□□ 1.21
HMGB1P09429 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC22.62■■□□□ 1.21
HMGB1P09429 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
HMGB1P09429 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC22.62■■□□□ 1.21
HMGB1P09429 AC026271.3-201ENST00000571884 352 ntBASIC22.62■■□□□ 1.21
HMGB1P09429 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms