Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF40O75150 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF40O75150 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
RNF40O75150 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF40O75150 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
RNF40O75150 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.66■□□□□ 0.9
RNF40O75150 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.66■□□□□ 0.9
RNF40O75150 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF40O75150 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
RNF40O75150 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF40O75150 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF40O75150 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.66■□□□□ 0.9
RNF40O75150 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.66■□□□□ 0.9
RNF40O75150 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF40O75150 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF40O75150 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF40O75150 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.65■□□□□ 0.9
RNF40O75150 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.65■□□□□ 0.9
RNF40O75150 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF40O75150 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.65■□□□□ 0.9
RNF40O75150 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.65■□□□□ 0.9
RNF40O75150 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.65■□□□□ 0.9
RNF40O75150 MIR4785-201ENST00000585005 73 ntBASIC20.65■□□□□ 0.9
RNF40O75150 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.65■□□□□ 0.9
RNF40O75150 AC113410.3-201ENST00000623366 203 ntBASIC20.65■□□□□ 0.9
RNF40O75150 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RNF40O75150 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
RNF40O75150 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
RNF40O75150 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
RNF40O75150 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.64■□□□□ 0.9
RNF40O75150 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
RNF40O75150 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
RNF40O75150 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
RNF40O75150 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
RNF40O75150 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
RNF40O75150 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.64■□□□□ 0.89
RNF40O75150 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.64■□□□□ 0.89
RNF40O75150 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.64■□□□□ 0.89
RNF40O75150 KRT18P21-201ENST00000515767 1272 ntBASIC20.64■□□□□ 0.89
RNF40O75150 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.64■□□□□ 0.89
RNF40O75150 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
RNF40O75150 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.64■□□□□ 0.89
RNF40O75150 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.64■□□□□ 0.89
RNF40O75150 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.64■□□□□ 0.89
RNF40O75150 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RNF40O75150 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.64■□□□□ 0.89
RNF40O75150 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
RNF40O75150 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.63■□□□□ 0.89
RNF40O75150 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RNF40O75150 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
RNF40O75150 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.63■□□□□ 0.89
RNF40O75150 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 TSPY15P-201ENST00000457163 923 ntBASIC20.63■□□□□ 0.89
RNF40O75150 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RNF40O75150 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.63■□□□□ 0.89
RNF40O75150 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RNF40O75150 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.63■□□□□ 0.89
RNF40O75150 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms