Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SHOX2O60902 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHOX2O60902 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
SHOX2O60902 AC108860.2-201ENST00000562760 2183 ntBASIC19.25■□□□□ 0.67
SHOX2O60902 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SHOX2O60902 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
SHOX2O60902 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.24■□□□□ 0.67
SHOX2O60902 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.24■□□□□ 0.67
SHOX2O60902 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.24■□□□□ 0.67
SHOX2O60902 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.24■□□□□ 0.67
SHOX2O60902 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.24■□□□□ 0.67
SHOX2O60902 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.24■□□□□ 0.67
SHOX2O60902 PBX2P1-201ENST00000493219 1291 ntBASIC19.24■□□□□ 0.67
SHOX2O60902 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.24■□□□□ 0.67
SHOX2O60902 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SHOX2O60902 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.24■□□□□ 0.67
SHOX2O60902 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.24■□□□□ 0.67
SHOX2O60902 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SHOX2O60902 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.24■□□□□ 0.67
SHOX2O60902 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
SHOX2O60902 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 AC135776.1-201ENST00000319817 2481 ntBASIC19.24■□□□□ 0.67
SHOX2O60902 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHOX2O60902 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
SHOX2O60902 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.23■□□□□ 0.67
SHOX2O60902 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.23■□□□□ 0.67
SHOX2O60902 KRT87P-202ENST00000534226 1464 ntBASIC19.23■□□□□ 0.67
SHOX2O60902 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SHOX2O60902 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.23■□□□□ 0.67
SHOX2O60902 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.23■□□□□ 0.67
SHOX2O60902 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 AC010141.2-201ENST00000452426 721 ntBASIC19.23■□□□□ 0.67
SHOX2O60902 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.23■□□□□ 0.67
SHOX2O60902 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.23■□□□□ 0.67
SHOX2O60902 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.23■□□□□ 0.67
SHOX2O60902 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.23■□□□□ 0.67
SHOX2O60902 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.23■□□□□ 0.67
SHOX2O60902 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHOX2O60902 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
SHOX2O60902 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SHOX2O60902 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.22■□□□□ 0.67
SHOX2O60902 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 AD000864.1-201ENST00000624076 2295 ntBASIC19.22■□□□□ 0.67
SHOX2O60902 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.22■□□□□ 0.67
SHOX2O60902 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.22■□□□□ 0.67
SHOX2O60902 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.22■□□□□ 0.67
SHOX2O60902 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.22■□□□□ 0.67
SHOX2O60902 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SHOX2O60902 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.22■□□□□ 0.67
SHOX2O60902 AC097381.1-201ENST00000429019 1296 ntBASIC19.22■□□□□ 0.67
SHOX2O60902 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.22■□□□□ 0.67
SHOX2O60902 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.22■□□□□ 0.67
SHOX2O60902 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.22■□□□□ 0.67
SHOX2O60902 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.22■□□□□ 0.67
SHOX2O60902 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.22■□□□□ 0.67
SHOX2O60902 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHOX2O60902 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.22■□□□□ 0.67
SHOX2O60902 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.21■□□□□ 0.67
SHOX2O60902 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHOX2O60902 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.21■□□□□ 0.67
SHOX2O60902 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.21■□□□□ 0.67
SHOX2O60902 SLC7A5P2-201ENST00000553010 536 ntBASIC19.21■□□□□ 0.67
SHOX2O60902 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms