Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LMX1BO60663 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.86■□□□□ 0.29
LMX1BO60663 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.86■□□□□ 0.29
LMX1BO60663 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
LMX1BO60663 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 RPS2P55-201ENST00000397318 883 ntBASIC16.86■□□□□ 0.29
LMX1BO60663 AL390719.1-204ENST00000412397 1219 ntBASIC16.86■□□□□ 0.29
LMX1BO60663 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.86■□□□□ 0.29
LMX1BO60663 AC107956.1-201ENST00000494359 873 ntBASIC16.86■□□□□ 0.29
LMX1BO60663 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 BX088651.1-201ENST00000540551 451 ntBASIC16.86■□□□□ 0.29
LMX1BO60663 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC16.86■□□□□ 0.29
LMX1BO60663 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.86■□□□□ 0.29
LMX1BO60663 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LMX1BO60663 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.86■□□□□ 0.29
LMX1BO60663 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.86■□□□□ 0.29
LMX1BO60663 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LMX1BO60663 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.85■□□□□ 0.29
LMX1BO60663 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.85■□□□□ 0.29
LMX1BO60663 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
LMX1BO60663 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.85■□□□□ 0.29
LMX1BO60663 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 ABHD17AP6-201ENST00000458502 1044 ntBASIC16.85■□□□□ 0.29
LMX1BO60663 AC010331.1-201ENST00000611423 582 ntBASIC16.85■□□□□ 0.29
LMX1BO60663 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
LMX1BO60663 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.85■□□□□ 0.29
LMX1BO60663 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.85■□□□□ 0.29
LMX1BO60663 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LMX1BO60663 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LMX1BO60663 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
LMX1BO60663 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
LMX1BO60663 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.85■□□□□ 0.29
LMX1BO60663 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
LMX1BO60663 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LMX1BO60663 CROCCP3-202ENST00000420820 1947 ntBASIC16.84■□□□□ 0.29
LMX1BO60663 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.84■□□□□ 0.29
LMX1BO60663 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LMX1BO60663 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LMX1BO60663 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LMX1BO60663 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.84■□□□□ 0.29
LMX1BO60663 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.84■□□□□ 0.29
LMX1BO60663 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
LMX1BO60663 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LMX1BO60663 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 MTDHP1-201ENST00000605323 784 ntBASIC16.84■□□□□ 0.29
LMX1BO60663 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.84■□□□□ 0.29
LMX1BO60663 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LMX1BO60663 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 ZNF815P-204ENST00000434898 1737 ntBASIC16.84■□□□□ 0.29
LMX1BO60663 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.84■□□□□ 0.29
LMX1BO60663 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LMX1BO60663 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
LMX1BO60663 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LMX1BO60663 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.29
LMX1BO60663 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
LMX1BO60663 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
LMX1BO60663 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1BO60663 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms