Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.87■□□□□ 0.45
PRKNO60260 MIR1238-201ENST00000408483 83 ntBASIC17.87■□□□□ 0.45
PRKNO60260 AC004951.3-201ENST00000418645 1148 ntBASIC17.87■□□□□ 0.45
PRKNO60260 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PRKNO60260 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.87■□□□□ 0.45
PRKNO60260 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PRKNO60260 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
PRKNO60260 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 KRT8P41-201ENST00000533985 1514 ntBASIC17.87■□□□□ 0.45
PRKNO60260 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
PRKNO60260 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PRKNO60260 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
PRKNO60260 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.86■□□□□ 0.45
PRKNO60260 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
PRKNO60260 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 MMP23A-201ENST00000234610 1017 ntBASIC17.86■□□□□ 0.45
PRKNO60260 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 AC211429.1-201ENST00000415277 523 ntBASIC17.86■□□□□ 0.45
PRKNO60260 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.86■□□□□ 0.45
PRKNO60260 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.86■□□□□ 0.45
PRKNO60260 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.86■□□□□ 0.45
PRKNO60260 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.86■□□□□ 0.45
PRKNO60260 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.86■□□□□ 0.45
PRKNO60260 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PRKNO60260 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
PRKNO60260 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.85■□□□□ 0.45
PRKNO60260 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
PRKNO60260 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.85■□□□□ 0.45
PRKNO60260 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
PRKNO60260 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
PRKNO60260 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
PRKNO60260 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.85■□□□□ 0.45
PRKNO60260 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.85■□□□□ 0.45
PRKNO60260 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.85■□□□□ 0.45
PRKNO60260 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.85■□□□□ 0.45
PRKNO60260 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.85■□□□□ 0.45
PRKNO60260 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.85■□□□□ 0.45
PRKNO60260 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.85■□□□□ 0.45
PRKNO60260 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.85■□□□□ 0.45
PRKNO60260 AC120498.9-201ENST00000339021 3867 ntBASIC17.85■□□□□ 0.45
PRKNO60260 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PRKNO60260 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.84■□□□□ 0.45
PRKNO60260 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.84■□□□□ 0.45
PRKNO60260 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.84■□□□□ 0.45
PRKNO60260 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
PRKNO60260 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
PRKNO60260 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.84■□□□□ 0.45
PRKNO60260 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
PRKNO60260 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.84■□□□□ 0.45
PRKNO60260 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.84■□□□□ 0.45
PRKNO60260 ECEL1P3-201ENST00000427961 737 ntBASIC17.84■□□□□ 0.45
PRKNO60260 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.84■□□□□ 0.45
PRKNO60260 FITM1-202ENST00000559294 800 ntBASIC17.84■□□□□ 0.45
PRKNO60260 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.84■□□□□ 0.45
PRKNO60260 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.84■□□□□ 0.45
PRKNO60260 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PRKNO60260 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.84■□□□□ 0.45
PRKNO60260 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.84■□□□□ 0.45
PRKNO60260 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
PRKNO60260 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms