Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 AP003041.3-201ENST00000527151 707 ntBASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 AL138966.2-201ENST00000621997 464 ntBASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 Z82202.1-201ENST00000623446 1880 ntBASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SMIM28A0A1B0GU29 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 AL049597.2-201ENST00000565575 961 ntBASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.59■□□□□ 0.89
SMIM28A0A1B0GU29 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 AC006011.2-201ENST00000621313 1158 ntBASIC20.58■□□□□ 0.89
SMIM28A0A1B0GU29 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.58■□□□□ 0.88
SMIM28A0A1B0GU29 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
SMIM28A0A1B0GU29 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SMIM28A0A1B0GU29 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SMIM28A0A1B0GU29 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
SMIM28A0A1B0GU29 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
SMIM28A0A1B0GU29 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 BX664615.1-201ENST00000443558 458 ntBASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SMIM28A0A1B0GU29 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms