Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RNA5SP509-201ENST00000364577 119 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RNU6-921P-201ENST00000384361 107 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 Y_RNA.554-201ENST00000384672 102 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 MIR93-201ENST00000385024 80 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AL121972.1-201ENST00000402023 252 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RAP1BP3-201ENST00000407180 549 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 MIR320C1-201ENST00000408566 88 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 MIR1183-201ENST00000408856 89 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AL133384.1-201ENST00000412744 351 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 VDAC1P9-201ENST00000412766 841 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC004987.3-201ENST00000413879 771 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AL513174.1-201ENST00000423182 629 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 CHIAP3-201ENST00000423668 1133 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC006946.1-201ENST00000429106 328 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RPS29P17-201ENST00000430795 166 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RPL23AP25-201ENST00000430973 463 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RNU7-136P-201ENST00000458819 69 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 SNORD108-201ENST00000459332 71 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RPS15AP17-201ENST00000470598 390 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 HMGB1P21-201ENST00000502313 581 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 IGLVIV-65-201ENST00000517313 360 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 MTCO2P4-201ENST00000517968 247 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 HSPA8P13-201ENST00000523715 472 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 PTP4A1P6-201ENST00000531034 478 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 CYCSP28-201ENST00000534284 321 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 MIR5186-201ENST00000577504 120 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 MIR544B-201ENST00000582372 78 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 RPL7P50-201ENST00000600588 727 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 AC090970.3-201ENST00000612566 866 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 MIR6716-201ENST00000613413 80 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 CR381653.2-201ENST00000624041 768 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 NXPH1-205ENST00000602349 1953 ntBASIC4.47□□□□□ -1.69
DKK3Q9UBP4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
DKK3Q9UBP4 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.46□□□□□ -1.69
DKK3Q9UBP4 ELF2P3-201ENST00000445099 1506 ntBASIC4.46□□□□□ -1.69
DKK3Q9UBP4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
DKK3Q9UBP4 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.46□□□□□ -1.69
DKK3Q9UBP4 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.46□□□□□ -1.69
DKK3Q9UBP4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 OR11H4-201ENST00000315409 1082 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 RNA5SP151-201ENST00000365632 117 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 RNU6-441P-201ENST00000384545 106 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 MIR649-201ENST00000384843 97 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 CIR1P3-201ENST00000405137 479 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 RNU4-25P-201ENST00000410569 230 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 RPS3AP3-201ENST00000411933 242 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 AC000111.3-201ENST00000433478 193 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 AC105402.2-201ENST00000438503 358 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 LSM1P1-201ENST00000438629 273 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 RPL23AP16-201ENST00000441715 421 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 PSPHP1-201ENST00000450062 261 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 RPS27AP17-201ENST00000463344 455 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 RPL31P58-201ENST00000469001 379 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 RPL23AP65-201ENST00000475608 468 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 FCF1P3-201ENST00000496394 590 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 AC108941.1-201ENST00000502853 530 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.46□□□□□ -1.7
DKK3Q9UBP4 FTH1P24-201ENST00000503502 462 ntBASIC4.46□□□□□ -1.7
DKK3Q9UBP4 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms