Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 VN1R40P-201ENST00000455196 941 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 RPL23AP31-201ENST00000456160 467 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AC097493.1-201ENST00000463958 372 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 HMGB1P25-201ENST00000468402 607 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AC090453.1-201ENST00000495560 436 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 TMEM251P1-201ENST00000503717 318 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 KLHL2P1-201ENST00000508691 521 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AC109458.1-201ENST00000508858 316 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 FTH1P21-201ENST00000512179 511 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 RNU6-27P-201ENST00000516146 107 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 SNORA31.8-201ENST00000516327 108 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 RNA5SP179-201ENST00000517284 121 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 SNRPGP16-201ENST00000533275 226 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 DUXAP6-201ENST00000553858 601 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 MIR4286-201ENST00000580651 93 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AL606490.9-201ENST00000603331 271 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 BNIP3P11-201ENST00000603878 563 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AL391497.1-201ENST00000608671 547 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AC025588.4-201ENST00000615802 908 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AL591424.2-201ENST00000617023 128 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AC097520.1-201ENST00000624435 385 ntBASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.66□□□□□ -1.82
NUP54Q7Z3B4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
NUP54Q7Z3B4 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.65□□□□□ -1.82
NUP54Q7Z3B4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
NUP54Q7Z3B4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
NUP54Q7Z3B4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.65□□□□□ -1.82
NUP54Q7Z3B4 AC021755.1-201ENST00000559747 1447 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 OR4G11P-202ENST00000642116 1414 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 RPS3AP26-201ENST00000398259 784 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AL356535.1-201ENST00000440335 398 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC010460.1-201ENST00000507087 466 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 CYCSP2-201ENST00000558168 301 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 MAGOH2P-202ENST00000584384 429 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC067959.1-201ENST00000604334 379 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC091167.4-201ENST00000605079 184 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AL139418.1-201ENST00000613613 177 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC015967.1-201ENST00000619893 476 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 MIR6500-201ENST00000622700 86 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 ZNF962P-201ENST00000443465 3140 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 AC018555.1-201ENST00000567548 1980 ntBASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
NUP54Q7Z3B4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 DDX43P2-201ENST00000604753 1354 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 UBE3AP2-201ENST00000429033 2259 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 AC009237.5-201ENST00000414271 501 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 YPEL5P1-201ENST00000419731 367 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 AL953862.1-201ENST00000423016 168 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 TBCAP1-201ENST00000436520 327 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 HMGB1P37-201ENST00000439613 609 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 RPL17P49-201ENST00000443728 411 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 AC104978.1-201ENST00000449387 391 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 AL445669.2-201ENST00000454425 421 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 RPL21P11-201ENST00000461458 483 ntBASIC3.64□□□□□ -1.83
NUP54Q7Z3B4 ST13P14-201ENST00000474095 734 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms