Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
ZC3H4Q9UPT8 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
ZC3H4Q9UPT8 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC6.62□□□□□ -1.35
ZC3H4Q9UPT8 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
ZC3H4Q9UPT8 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC6.62□□□□□ -1.35
ZC3H4Q9UPT8 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
ZC3H4Q9UPT8 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
ZC3H4Q9UPT8 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.62□□□□□ -1.35
ZC3H4Q9UPT8 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
ZC3H4Q9UPT8 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 SOD2P1-201ENST00000396543 562 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AL139397.2-201ENST00000404529 772 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 OFD1P1Y-201ENST00000411756 1225 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AL591848.1-201ENST00000413092 322 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 SKA2P1-201ENST00000425592 390 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC009127.1-201ENST00000467090 155 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 DUTP1-201ENST00000493631 470 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC015911.1-201ENST00000495111 156 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC068305.1-201ENST00000497406 726 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 RNU2-10P-201ENST00000516375 211 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC090136.1-201ENST00000520009 240 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC006157.1-201ENST00000611750 366 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AC000095.2-202ENST00000637415 154 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 PNPT1P2-201ENST00000456768 2050 ntBASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
ZC3H4Q9UPT8 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AC130650.2-201ENST00000618736 2403 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 Y_RNA.167-201ENST00000363735 109 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 SET-203ENST00000372688 801 ntTSL 2 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 RPL12P17-201ENST00000432393 498 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 GSTM5P1-201ENST00000434751 660 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 RPL21P89-201ENST00000444021 467 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AC073264.2-201ENST00000448886 166 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AP001992.1-205ENST00000462248 379 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 PARP1P2-201ENST00000556806 195 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 AC005341.1-201ENST00000571086 708 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 MIR132-201ENST00000591554 101 ntBASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
ZC3H4Q9UPT8 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
ZC3H4Q9UPT8 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.59□□□□□ -1.35
ZC3H4Q9UPT8 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
ZC3H4Q9UPT8 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
ZC3H4Q9UPT8 SDAD1P1-202ENST00000524156 2051 ntBASIC6.59□□□□□ -1.35
ZC3H4Q9UPT8 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
ZC3H4Q9UPT8 AC069218.2-201ENST00000411665 344 ntBASIC6.59□□□□□ -1.35
ZC3H4Q9UPT8 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC6.59□□□□□ -1.35
ZC3H4Q9UPT8 OR2AM1P-201ENST00000422137 422 ntBASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms