Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 OR6R2P-201ENST00000609216 300 ntBASIC4.3□□□□□ -1.72
VSX1Q9NZR4 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VSX1Q9NZR4 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VSX1Q9NZR4 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VSX1Q9NZR4 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.3□□□□□ -1.72
VSX1Q9NZR4 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
VSX1Q9NZR4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VSX1Q9NZR4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 MAPK10-303ENST00000641324 3959 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 SALL4P2-201ENST00000423288 2910 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC099654.2-201ENST00000433031 1980 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 FAM91A3P-201ENST00000456826 2544 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC109780.1-201ENST00000451768 1344 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC105074.1-201ENST00000623380 3095 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RNA5SP502-201ENST00000362694 119 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RNU1-83P-201ENST00000363426 164 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RNU6-1090P-201ENST00000364065 94 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RNU6-282P-201ENST00000365357 103 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 Y_RNA.409-201ENST00000383990 98 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RNU6-1009P-201ENST00000390996 107 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RNU6-780P-201ENST00000391030 104 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RPL7P60-201ENST00000397636 735 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RPS4XP8-201ENST00000402039 771 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 MRPL50P2-201ENST00000416821 482 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RPL21P111-201ENST00000418453 477 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 OR4F13P-201ENST00000428478 931 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 GPR143P-201ENST00000434155 205 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RPS17P8-201ENST00000434525 335 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC098614.3-201ENST00000438957 440 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC127537.2-201ENST00000439258 465 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 SEPT14P3-201ENST00000439401 183 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AL732372.2-207ENST00000445840 183 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 UBE2V1P7-201ENST00000446395 340 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 SNRPGP6-201ENST00000451124 220 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 SEPT14P2-201ENST00000453405 183 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 SNORD121B-201ENST00000458838 81 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RNU6-261P-201ENST00000459506 102 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC108751.2-201ENST00000469993 231 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC083798.1-201ENST00000472671 131 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RN7SL177P-201ENST00000476596 299 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC055855.1-201ENST00000489563 579 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC069439.1-201ENST00000494739 167 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RN7SL808P-201ENST00000496066 299 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC140172.1-201ENST00000502928 141 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 COX7A2P2-201ENST00000505291 250 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 SEPT14P4-201ENST00000513445 186 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RN7SKP66-201ENST00000516681 231 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 RNA5SP34-201ENST00000516887 130 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 FO082796.1-201ENST00000523795 183 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC011979.2-201ENST00000527568 352 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 OR5BC1P-201ENST00000529327 739 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC024224.1-201ENST00000538284 609 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 HMGB1P6-201ENST00000569046 646 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC055876.5-201ENST00000605667 259 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC093788.1-201ENST00000609356 927 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AL355472.4-201ENST00000610233 626 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AL121612.2-201ENST00000612261 482 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AC104260.1-201ENST00000616660 539 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 EIF2AP4-201ENST00000424793 1781 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 AL133412.1-201ENST00000380194 2992 ntBASIC4.29□□□□□ -1.72
VSX1Q9NZR4 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VSX1Q9NZR4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.28□□□□□ -1.72
VSX1Q9NZR4 AC017104.4-201ENST00000636283 1592 ntBASIC4.28□□□□□ -1.72
VSX1Q9NZR4 CKAP2P1-201ENST00000555477 2049 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms