Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 SEPT14P3-201ENST00000439401 183 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 MTND6P18-201ENST00000439477 513 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AC112498.1-201ENST00000444401 332 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AL732372.2-207ENST00000445840 183 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 PPIAP3-201ENST00000450588 505 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AL691482.1-201ENST00000453255 87 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 SEPT14P2-201ENST00000453405 183 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AC231760.1-201ENST00000498002 260 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 MRPS33P2-201ENST00000507850 322 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 SEPT14P4-201ENST00000513445 186 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 RNU6-358P-201ENST00000516564 75 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 Y_RNA.702-201ENST00000516843 96 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 HMGB1P19-201ENST00000517578 577 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AC090572.1-201ENST00000519251 160 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 FO082796.1-201ENST00000523795 183 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 BNIP3P30-201ENST00000601184 574 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AC006254.3-201ENST00000603353 884 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 TUG1_1.1-201ENST00000610654 145 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AC092794.2-201ENST00000620933 563 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AC244100.1-202ENST00000621554 382 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 FER-210ENST00000628534 558 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 NMD3P1-201ENST00000439704 1488 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.9□□□□□ -1.62
TRIM39Q9HCM9 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 U3.11-201ENST00000364476 212 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 UBBP2-201ENST00000376781 231 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 RNU6-432P-201ENST00000384196 109 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL133270.1-201ENST00000402635 279 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL359643.1-201ENST00000404109 423 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 RNU2-47P-201ENST00000410649 186 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 JKAMPP1-201ENST00000413804 919 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC009237.5-201ENST00000414271 501 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 COX6B1P1-201ENST00000415962 213 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 SNRPEP10-201ENST00000420249 274 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL137014.1-201ENST00000420490 1226 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL353193.1-201ENST00000421444 268 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 OR2AM1P-201ENST00000422137 422 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC016712.1-201ENST00000431088 378 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 NANOGP10-201ENST00000453325 895 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 HMGB1P25-201ENST00000468402 607 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC083798.1-201ENST00000472671 131 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 GAPDHP56-201ENST00000506031 988 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 OR5D15P-201ENST00000531671 942 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC105224.1-201ENST00000587055 421 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL158211.4-201ENST00000606988 584 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AL603758.1-201ENST00000618654 241 ntBASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.9□□□□□ -1.63
TRIM39Q9HCM9 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms