Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC025588.3-201ENST00000604182 274 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC004805.2-201ENST00000605382 482 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC092266.1-201ENST00000610958 165 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 EIF3FP1-201ENST00000613970 806 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 MIR8062-201ENST00000621515 85 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 AC079776.5-201ENST00000641920 211 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 BDP1P-201ENST00000582658 1990 ntBASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HIF3AQ9Y2N7 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 BRAFP1-201ENST00000445336 2703 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.461-201ENST00000384263 103 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-713P-201ENST00000384761 107 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 RNU11-201ENST00000387069 134 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC093106.2-201ENST00000428212 385 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AL138899.2-201ENST00000439139 499 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC010733.1-201ENST00000451515 401 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC009963.3-201ENST00000458090 486 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AL117692.1-201ENST00000494283 713 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC104109.1-201ENST00000498563 436 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 VN1R104P-201ENST00000505115 1009 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 SCARNA18.1-201ENST00000516330 83 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 SCARNA16.2-201ENST00000516520 172 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 RN7SKP183-201ENST00000517169 324 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 RNU1-54P-201ENST00000517181 120 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 TRIM77BP-201ENST00000524985 1119 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AL137100.2-201ENST00000555786 315 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC024619.4-201ENST00000580924 316 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AL360012.1-201ENST00000602813 131 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 IGHV3-29-201ENST00000604817 344 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC245014.3-201ENST00000618589 347 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC103705.1-201ENST00000619013 241 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC015967.1-201ENST00000619893 476 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 PARP4P2-201ENST00000446672 3326 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 AC004076.2-201ENST00000620532 3323 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 BCORP1-203ENST00000513194 5093 ntBASIC5.24□□□□□ -1.57
HIF3AQ9Y2N7 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AP004607.3-201ENST00000530354 3915 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.60-201ENST00000362831 98 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.117-201ENST00000363294 101 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-61P-201ENST00000365528 109 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 RNU5E-6P-201ENST00000365574 115 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 RNU6-472P-201ENST00000384299 107 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 Y_RNA.477-201ENST00000384352 108 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 SNORA11.3-201ENST00000408471 128 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 CEP57L1P1-201ENST00000430943 1201 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC092162.1-201ENST00000432828 434 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 LAMTOR5P1-201ENST00000444290 270 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 OSTCP8-201ENST00000445117 448 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 Z95327.1-201ENST00000446082 482 ntBASIC5.23□□□□□ -1.57
HIF3AQ9Y2N7 RPS15AP27-201ENST00000449183 343 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms