Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 ZNF33CP-201ENST00000432492 2030 ntBASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 AC017104.4-201ENST00000636283 1592 ntBASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 ZNF734P-201ENST00000419494 1534 ntBASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 LINC01355-201ENST00000566551 5444 ntBASIC4.31□□□□□ -1.72
PAAF1Q9BRP4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC105074.1-201ENST00000623380 3095 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 FGF7P2-201ENST00000332473 296 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RNA5SP399-201ENST00000364003 117 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RNU4-91P-201ENST00000364778 135 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC019155.1-201ENST00000382242 574 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 MT-TC-201ENST00000387405 66 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RNA5SP372-201ENST00000390836 115 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RNA5SP171-201ENST00000391071 115 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RN7SKP266-201ENST00000410232 287 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 MTCO3P41-201ENST00000414801 328 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RPL31P45-201ENST00000419532 356 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 PSMA6P3-201ENST00000428242 164 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC127537.2-201ENST00000439258 465 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AL500522.2-201ENST00000448562 343 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RPL7P31-201ENST00000450192 724 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 HMGB1P15-201ENST00000453854 435 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 OR6K1P-201ENST00000456766 971 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 OR9M1P-201ENST00000459641 921 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC104563.1-201ENST00000476147 376 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RNA5SP179-201ENST00000517284 121 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 COX6CP8-201ENST00000522620 226 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 MTND4LP18-201ENST00000526864 291 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 OR5AP1P-201ENST00000529730 940 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 YPEL5P3-201ENST00000547227 352 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 CENPUP2-201ENST00000555897 1186 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC091489.2-201ENST00000566263 604 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC007599.1-201ENST00000568688 1174 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 HNRNPCP4-201ENST00000571636 900 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AP001180.3-201ENST00000582221 145 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC091167.4-201ENST00000605079 184 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AC004009.2-201ENST00000623016 728 ntBASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.3□□□□□ -1.72
PAAF1Q9BRP4 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 DCAF13P1-201ENST00000495256 1330 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 MARK2P15-201ENST00000432204 2186 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 MIR1305-201ENST00000408300 86 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 MTCO1P17-201ENST00000411522 491 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.29□□□□□ -1.72
PAAF1Q9BRP4 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms