Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.79□□□□□ -1.8
USP28Q96RU2 MTATP6P15-201ENST00000527233 835 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 UBTFL10-201ENST00000528532 562 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 OR5B10P-201ENST00000532869 642 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 PDCL2P2-201ENST00000533651 189 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.79□□□□□ -1.8
USP28Q96RU2 ZNF192P1-203ENST00000565888 810 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC061975.8-201ENST00000587058 721 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC025588.2-201ENST00000604851 466 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC016877.3-201ENST00000606778 504 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.79□□□□□ -1.8
USP28Q96RU2 AL592148.2-201ENST00000612210 372 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 SNORD39.4-201ENST00000620099 78 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AL356321.1-201ENST00000621360 228 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC092628.2-201ENST00000622492 339 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC068057.2-201ENST00000624047 895 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AC048347.1-201ENST00000624621 427 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 AL392088.2-201ENST00000637607 285 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP28Q96RU2 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.79□□□□□ -1.8
USP28Q96RU2 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP28Q96RU2 AC011978.2-201ENST00000569835 2054 ntBASIC3.79□□□□□ -1.8
USP28Q96RU2 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USP28Q96RU2 ERHP2-201ENST00000402323 299 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 HSPE1P26-201ENST00000405341 275 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 RNU6ATAC-201ENST00000408749 126 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 RN7SKP202-201ENST00000410439 330 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 EI24P1-201ENST00000416584 867 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.78□□□□□ -1.8
USP28Q96RU2 ARF4P2-201ENST00000430209 526 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.78□□□□□ -1.8
USP28Q96RU2 TXNP1-201ENST00000441872 371 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AL590399.6-201ENST00000446396 307 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 NPM1P49-201ENST00000448027 714 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AL133547.1-201ENST00000448546 220 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.78□□□□□ -1.8
USP28Q96RU2 BX248409.1-201ENST00000455497 255 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.78□□□□□ -1.8
USP28Q96RU2 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.78□□□□□ -1.8
USP28Q96RU2 RN7SL542P-201ENST00000467147 294 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 RPL21P13-201ENST00000488305 481 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AC119751.5-201ENST00000514077 770 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AC008494.2-201ENST00000514544 370 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 RNU1-45P-201ENST00000517191 141 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.78□□□□□ -1.8
USP28Q96RU2 MTND2P26-201ENST00000528255 1029 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AC015917.1-201ENST00000579654 510 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AP001269.3-201ENST00000588718 329 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 VN1R88P-201ENST00000596787 292 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AL359535.1-201ENST00000612100 1087 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 uc_338.1-201ENST00000612113 180 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AC018926.3-201ENST00000618841 406 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 CR392039.5-201ENST00000623201 510 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AP003485.2-201ENST00000623636 610 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AC073476.4-201ENST00000628409 72 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 AC244258.1-201ENST00000637553 1071 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 MTND2P41-201ENST00000637599 773 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP28Q96RU2 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
USP28Q96RU2 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.78□□□□□ -1.8
USP28Q96RU2 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USP28Q96RU2 AF117829.1-206ENST00000621883 3802 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 SRP72P2-201ENST00000344851 1979 ntBASIC3.78□□□□□ -1.8
USP28Q96RU2 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
USP28Q96RU2 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
USP28Q96RU2 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.81
USP28Q96RU2 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
USP28Q96RU2 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.77□□□□□ -1.81
USP28Q96RU2 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
USP28Q96RU2 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
USP28Q96RU2 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
USP28Q96RU2 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USP28Q96RU2 SFR1P1-201ENST00000403720 688 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 RNA5SP293-201ENST00000410527 113 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USP28Q96RU2 Z75741.2-201ENST00000417272 1167 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC012065.2-201ENST00000421295 375 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.77□□□□□ -1.81
USP28Q96RU2 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.77□□□□□ -1.81
USP28Q96RU2 AC018644.1-201ENST00000429934 551 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 USP9YP31-201ENST00000431405 881 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.77□□□□□ -1.81
USP28Q96RU2 CYCSP43-201ENST00000438233 310 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 MTCYBP31-201ENST00000438855 1122 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 COX6CP18-201ENST00000448769 222 ntBASIC3.77□□□□□ -1.81
USP28Q96RU2 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms