Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.62□□□□□ -1.35
LRCH3Q96II8 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC6.62□□□□□ -1.35
LRCH3Q96II8 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
LRCH3Q96II8 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
LRCH3Q96II8 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LRCH3Q96II8 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.62□□□□□ -1.35
LRCH3Q96II8 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LRCH3Q96II8 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
LRCH3Q96II8 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LRCH3Q96II8 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LRCH3Q96II8 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LRCH3Q96II8 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
LRCH3Q96II8 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
LRCH3Q96II8 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 BX322639.1-202ENST00000423987 2213 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 RNU1-49P-201ENST00000363468 159 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 RNA5SP500-201ENST00000364486 119 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 SNORA53-201ENST00000391141 249 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 AL139039.1-201ENST00000401900 692 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 RPL23AP38-201ENST00000423801 469 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 TPT1P13-201ENST00000449760 499 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 AC104073.1-201ENST00000451988 151 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 FABP5P13-201ENST00000452144 328 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 GEMIN2P1-201ENST00000454246 752 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 RNU7-138P-201ENST00000459479 64 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 OLMALINC-203ENST00000641087 3779 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 Z75746.1-201ENST00000440243 2080 ntBASIC6.61□□□□□ -1.35
LRCH3Q96II8 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.61□□□□□ -1.35
LRCH3Q96II8 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
LRCH3Q96II8 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 MAPK10-270ENST00000641102 3538 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 RNA5SP350-201ENST00000363298 111 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 Y_RNA.240-201ENST00000364469 95 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 SMIM11P1-201ENST00000369586 178 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 RNU6-790P-201ENST00000384479 105 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 Y_RNA.592-201ENST00000410274 109 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 BX842559.1-201ENST00000419615 532 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 AC087650.1-201ENST00000431445 468 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 AC006466.1-201ENST00000438721 289 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 RN7SL269P-201ENST00000467795 305 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 RPS29P22-201ENST00000472363 168 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 AC087190.1-201ENST00000484462 480 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 AC107032.1-201ENST00000485945 480 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 RN7SL97P-201ENST00000486780 299 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 RN7SL346P-201ENST00000491561 294 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 RPS24P16-201ENST00000497294 392 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 MIR4330-201ENST00000579077 105 ntBASIC6.6□□□□□ -1.35
LRCH3Q96II8 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC6.6□□□□□ -1.35
LRCH3Q96II8 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LRCH3Q96II8 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms