Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RN7SKP21-201ENST00000516503 220 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 Y_RNA.719-201ENST00000517156 106 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 AC022690.1-201ENST00000526681 550 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USP39Q53GS9 AL352979.3-201ENST00000553515 247 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 HIF1AP1-201ENST00000553642 175 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 RPL21P5-201ENST00000554662 472 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 PSMA3P-201ENST00000555485 635 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.8□□□□□ -1.64
USP39Q53GS9 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.8□□□□□ -1.64
USP39Q53GS9 RN7SL802P-201ENST00000577858 299 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.8□□□□□ -1.64
USP39Q53GS9 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.8□□□□□ -1.64
USP39Q53GS9 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.8□□□□□ -1.64
USP39Q53GS9 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.8□□□□□ -1.64
USP39Q53GS9 NRBF2P5-201ENST00000603087 788 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 LLPHP1-201ENST00000603571 367 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 Z98200.1-201ENST00000607298 470 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 PISRT1-201ENST00000626175 531 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP39Q53GS9 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
USP39Q53GS9 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.8□□□□□ -1.64
USP39Q53GS9 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP39Q53GS9 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
USP39Q53GS9 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.8□□□□□ -1.64
USP39Q53GS9 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USP39Q53GS9 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.8□□□□□ -1.64
USP39Q53GS9 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
USP39Q53GS9 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP39Q53GS9 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.79□□□□□ -1.64
USP39Q53GS9 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.79□□□□□ -1.64
USP39Q53GS9 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
USP39Q53GS9 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
USP39Q53GS9 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP39Q53GS9 OR4A15-201ENST00000314706 1035 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
USP39Q53GS9 Y_RNA.58-201ENST00000362807 102 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 Y_RNA.72-201ENST00000362894 103 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RNU6-492P-201ENST00000363035 104 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RNU6-666P-201ENST00000363499 107 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 Y_RNA.154-201ENST00000363624 102 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RNY3P1-201ENST00000365085 102 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RNY3-201ENST00000365484 102 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
USP39Q53GS9 Y_RNA.490-201ENST00000384413 102 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 Y_RNA.608-201ENST00000410647 95 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 TMBIM7P-201ENST00000418074 855 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 PIGFP2-201ENST00000421400 651 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.79□□□□□ -1.64
USP39Q53GS9 CALM1P1-201ENST00000442082 433 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RPL7P59-201ENST00000447700 943 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 AL935212.3-201ENST00000450729 284 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 IFNWP4-201ENST00000453148 294 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 C1DP4-201ENST00000455429 424 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 AC010618.1-201ENST00000469924 477 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RPL35P6-201ENST00000490024 372 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 KLRA1P-201ENST00000503499 986 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AC010486.1-201ENST00000511793 424 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RNU6-513P-201ENST00000516104 104 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RNA5SP249-201ENST00000516127 99 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RNU6-347P-201ENST00000516658 105 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.79□□□□□ -1.64
USP39Q53GS9 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AC008127.2-201ENST00000549925 1075 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AC078814.3-201ENST00000553036 491 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.79□□□□□ -1.64
USP39Q53GS9 RN7SL652P-201ENST00000577769 300 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 AC023575.1-201ENST00000580510 358 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 MIR4307-201ENST00000582802 84 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 MIR3936-201ENST00000584304 110 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RN7SL435P-201ENST00000584418 282 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.79□□□□□ -1.64
USP39Q53GS9 COX6CP4-201ENST00000605798 228 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 AP005019.3-201ENST00000620418 560 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 AC110994.2-201ENST00000635481 492 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.79□□□□□ -1.64
USP39Q53GS9 AL731566.1-201ENST00000620490 1937 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
USP39Q53GS9 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.79□□□□□ -1.64
USP39Q53GS9 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP39Q53GS9 MAPK10-320ENST00000641462 6696 ntBASIC4.79□□□□□ -1.64
USP39Q53GS9 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
USP39Q53GS9 MTCO1P14-201ENST00000441695 1559 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP39Q53GS9 LINC00561-201ENST00000565815 2738 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.78□□□□□ -1.64
USP39Q53GS9 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP39Q53GS9 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.78□□□□□ -1.64
USP39Q53GS9 Y_RNA.126-201ENST00000363382 111 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 Y_RNA.138-201ENST00000363462 102 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 RNY4P34-201ENST00000364779 95 ntBASIC4.78□□□□□ -1.64
USP39Q53GS9 SNORA71.2-201ENST00000364941 134 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms