Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.18□□□□□ -1.9
SHHQ15465 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.18□□□□□ -1.9
SHHQ15465 ZNF542P-204ENST00000482727 1305 ntBASIC3.18□□□□□ -1.9
SHHQ15465 DCAF13P1-201ENST00000495256 1330 ntBASIC3.18□□□□□ -1.9
SHHQ15465 AC096644.4-201ENST00000563417 2912 ntBASIC3.17□□□□□ -1.9
SHHQ15465 AC092326.2-201ENST00000624772 1561 ntBASIC3.17□□□□□ -1.9
SHHQ15465 PWAR6-201ENST00000552334 4618 ntBASIC3.17□□□□□ -1.9
SHHQ15465 RNA5SP68-201ENST00000363885 119 ntBASIC3.17□□□□□ -1.9
SHHQ15465 SNORA67.4-201ENST00000384688 142 ntBASIC3.17□□□□□ -1.9
SHHQ15465 BX276092.3-201ENST00000424182 230 ntBASIC3.17□□□□□ -1.9
SHHQ15465 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.17□□□□□ -1.9
SHHQ15465 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.17□□□□□ -1.9
SHHQ15465 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC3.17□□□□□ -1.9
SHHQ15465 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.17□□□□□ -1.9
SHHQ15465 WASF1P1-201ENST00000447560 1131 ntBASIC3.17□□□□□ -1.9
SHHQ15465 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.17□□□□□ -1.9
SHHQ15465 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.17□□□□□ -1.9
SHHQ15465 AC096992.1-201ENST00000459808 709 ntBASIC3.17□□□□□ -1.9
SHHQ15465 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.17□□□□□ -1.9
SHHQ15465 ACTG1P13-201ENST00000486987 1043 ntBASIC3.17□□□□□ -1.9
SHHQ15465 AC090543.1-201ENST00000492168 485 ntBASIC3.17□□□□□ -1.9
SHHQ15465 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.17□□□□□ -1.9
SHHQ15465 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.17□□□□□ -1.9
SHHQ15465 RNU6-889P-201ENST00000517189 103 ntBASIC3.17□□□□□ -1.9
SHHQ15465 OR8K2P-201ENST00000524645 927 ntBASIC3.17□□□□□ -1.9
SHHQ15465 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC3.17□□□□□ -1.9
SHHQ15465 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.17□□□□□ -1.9
SHHQ15465 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.17□□□□□ -1.9
SHHQ15465 AC069304.3-201ENST00000603938 1084 ntBASIC3.17□□□□□ -1.9
SHHQ15465 RMST_8.1-201ENST00000610287 165 ntBASIC3.17□□□□□ -1.9
SHHQ15465 AC099778.2-201ENST00000610904 211 ntBASIC3.17□□□□□ -1.9
SHHQ15465 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHHQ15465 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.17□□□□□ -1.9
SHHQ15465 MIR6864-201ENST00000617935 70 ntBASIC3.17□□□□□ -1.9
SHHQ15465 AC022079.2-201ENST00000619739 566 ntBASIC3.17□□□□□ -1.9
SHHQ15465 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
SHHQ15465 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHHQ15465 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SHHQ15465 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SHHQ15465 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.17□□□□□ -1.9
SHHQ15465 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
SHHQ15465 AP001148.1-201ENST00000624124 2359 ntBASIC3.16□□□□□ -1.9
SHHQ15465 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 METTL21EP-201ENST00000298105 713 ntBASIC3.16□□□□□ -1.9
SHHQ15465 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SHHQ15465 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SHHQ15465 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.16□□□□□ -1.9
SHHQ15465 RNU2-6P-201ENST00000411404 190 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC234782.4-201ENST00000417646 1048 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AIMP1P1-201ENST00000418670 937 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AP000936.2-201ENST00000447151 681 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.16□□□□□ -1.9
SHHQ15465 HGF-207ENST00000453018 721 ntTSL 3 BASIC3.16□□□□□ -1.9
SHHQ15465 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.16□□□□□ -1.9
SHHQ15465 AC146507.1-201ENST00000468335 354 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.16□□□□□ -1.9
SHHQ15465 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.16□□□□□ -1.9
SHHQ15465 AC090071.1-201ENST00000507713 644 ntBASIC3.16□□□□□ -1.9
SHHQ15465 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.16□□□□□ -1.9
SHHQ15465 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.16□□□□□ -1.9
SHHQ15465 RN7SKP234-201ENST00000517173 224 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.16□□□□□ -1.9
SHHQ15465 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.16□□□□□ -1.9
SHHQ15465 AC012414.2-201ENST00000559474 187 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.16□□□□□ -1.9
SHHQ15465 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.16□□□□□ -1.9
SHHQ15465 MIR4738-201ENST00000579134 87 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC079089.3-201ENST00000603094 673 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC105148.1-201ENST00000604961 409 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AL355802.4-201ENST00000607635 548 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AL355816.2-201ENST00000610049 647 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC009159.1-201ENST00000618386 642 ntBASIC3.16□□□□□ -1.9
SHHQ15465 XIST_intron.1-201ENST00000619444 68 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC007318.2-201ENST00000620999 243 ntBASIC3.16□□□□□ -1.9
SHHQ15465 AC006065.5-201ENST00000623427 349 ntBASIC3.16□□□□□ -1.9
SHHQ15465 LINC00216-201ENST00000623548 1126 ntBASIC3.16□□□□□ -1.9
SHHQ15465 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.16□□□□□ -1.9
SHHQ15465 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.16□□□□□ -1.9
SHHQ15465 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.16□□□□□ -1.9
SHHQ15465 SEPT7P7-201ENST00000420492 1301 ntBASIC3.16□□□□□ -1.9
SHHQ15465 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHHQ15465 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
SHHQ15465 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.15□□□□□ -1.9
SHHQ15465 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.15□□□□□ -1.9
SHHQ15465 AC138915.3-201ENST00000562908 1389 ntBASIC3.15□□□□□ -1.9
SHHQ15465 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.15□□□□□ -1.9
SHHQ15465 AL589655.1-201ENST00000405398 482 ntBASIC3.15□□□□□ -1.91
SHHQ15465 Z86062.1-201ENST00000406773 777 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms