Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC068587.2-201ENST00000478386 781 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 SETP6-201ENST00000479329 568 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXC4P09017 AC098862.1-201ENST00000504991 413 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 AC005921.1-201ENST00000510589 286 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXC4P09017 AC133963.2-201ENST00000513686 578 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 RNU2-58P-201ENST00000516403 183 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXC4P09017 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXC4P09017 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXC4P09017 AC118942.1-201ENST00000529674 1035 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXC4P09017 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXC4P09017 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXC4P09017 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.18□□□□□ -1.9
HOXC4P09017 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXC4P09017 AL442163.2-201ENST00000553912 710 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 AC027104.1-201ENST00000563702 681 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 MIR4325-201ENST00000583049 90 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 MTCO2P2-201ENST00000591258 225 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 AL606834.3-201ENST00000602615 496 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 OR2BH1P-201ENST00000608850 864 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 AC124016.2-201ENST00000610058 665 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 DUXAP10-204ENST00000612052 616 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXC4P09017 AC024595.1-201ENST00000623088 387 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.18□□□□□ -1.9
HOXC4P09017 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC4P09017 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXC4P09017 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC4P09017 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXC4P09017 OR5BR1P-201ENST00000524992 1330 ntBASIC3.18□□□□□ -1.9
HOXC4P09017 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HOXC4P09017 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC4P09017 RNA5SP374-201ENST00000362939 125 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 MIR591-201ENST00000385290 95 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HOXC4P09017 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.17□□□□□ -1.9
HOXC4P09017 RNU6-55P-201ENST00000411092 107 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 RNU6-954P-201ENST00000411355 107 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC007899.1-201ENST00000412776 775 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 BX890604.2-201ENST00000427883 474 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC4P09017 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC4P09017 CST9LP2-201ENST00000437612 320 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AL590399.6-201ENST00000446396 307 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 EXOSC3P1-201ENST00000448649 500 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 MRPS31P2-201ENST00000451581 518 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AC006539.3-201ENST00000454258 129 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 RN7SL863P-201ENST00000462370 296 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AC008379.1-201ENST00000463655 464 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC4P09017 AC021146.5-201ENST00000503544 545 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC4P09017 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.17□□□□□ -1.9
HOXC4P09017 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 AP000916.1-201ENST00000533869 835 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.17□□□□□ -1.9
HOXC4P09017 TRAV37-201ENST00000553906 342 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 OR4H12P-201ENST00000556269 907 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC104229.1-201ENST00000561364 255 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC068313.1-201ENST00000604028 1008 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AC005000.2-201ENST00000605468 310 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 AC021851.1-201ENST00000608537 1082 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.17□□□□□ -1.9
HOXC4P09017 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC073476.4-201ENST00000628409 72 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
HOXC4P09017 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXC4P09017 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
HOXC4P09017 AC104446.1-201ENST00000613728 1321 ntBASIC3.17□□□□□ -1.9
HOXC4P09017 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXC4P09017 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC4P09017 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC4P09017 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXC4P09017 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC4P09017 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
HOXC4P09017 OR1S2-201ENST00000302592 978 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC4P09017 MIR30E-201ENST00000362104 92 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 SNORA31-201ENST00000362607 130 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 RNA5SP189-201ENST00000364920 115 ntBASIC3.16□□□□□ -1.9
HOXC4P09017 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXC4P09017 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
HOXC4P09017 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXC4P09017 RNU6-298P-201ENST00000390888 96 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms