Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.46□□□□□ -1.86
SDC3O75056 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.46□□□□□ -1.86
SDC3O75056 GTF2IP8-201ENST00000560687 584 ntBASIC3.46□□□□□ -1.86
SDC3O75056 ZNF192P1-203ENST00000565888 810 ntBASIC3.46□□□□□ -1.86
SDC3O75056 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.46□□□□□ -1.86
SDC3O75056 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.46□□□□□ -1.86
SDC3O75056 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.46□□□□□ -1.86
SDC3O75056 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.46□□□□□ -1.86
SDC3O75056 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.46□□□□□ -1.86
SDC3O75056 SNORD39.3-201ENST00000584451 71 ntBASIC3.46□□□□□ -1.86
SDC3O75056 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.46□□□□□ -1.86
SDC3O75056 AL355812.1-201ENST00000603215 216 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AC073387.2-201ENST00000604797 784 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AL158050.2-201ENST00000605336 568 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AL583856.2-201ENST00000606298 543 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AL139022.2-201ENST00000606934 443 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.46□□□□□ -1.86
SDC3O75056 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.46□□□□□ -1.86
SDC3O75056 AL391834.2-201ENST00000609982 546 ntBASIC3.46□□□□□ -1.86
SDC3O75056 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.46□□□□□ -1.86
SDC3O75056 AL157770.1-201ENST00000623049 439 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AC104985.3-201ENST00000623479 597 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AC087821.2-201ENST00000637086 450 ntBASIC3.46□□□□□ -1.86
SDC3O75056 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SDC3O75056 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SDC3O75056 ZNF833P-201ENST00000424938 1494 ntBASIC3.46□□□□□ -1.86
SDC3O75056 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
SDC3O75056 AL049781.1-201ENST00000623195 3585 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AC006504.1-201ENST00000562493 3666 ntBASIC3.46□□□□□ -1.86
SDC3O75056 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
SDC3O75056 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.45□□□□□ -1.86
SDC3O75056 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 HMGB1P5-201ENST00000255320 642 ntBASIC3.45□□□□□ -1.86
SDC3O75056 SNORA38.1-201ENST00000364172 131 ntBASIC3.45□□□□□ -1.86
SDC3O75056 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
SDC3O75056 RNU6-339P-201ENST00000384310 107 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.45□□□□□ -1.86
SDC3O75056 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AL583834.1-201ENST00000406943 343 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AL023807.1-201ENST00000407932 359 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AL354692.1-201ENST00000423044 315 ntBASIC3.45□□□□□ -1.86
SDC3O75056 RPS6P14-201ENST00000425165 719 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AL035410.1-201ENST00000427409 427 ntBASIC3.45□□□□□ -1.86
SDC3O75056 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.45□□□□□ -1.86
SDC3O75056 USP9YP31-201ENST00000431405 881 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.45□□□□□ -1.86
SDC3O75056 NPM1P13-201ENST00000452663 865 ntBASIC3.45□□□□□ -1.86
SDC3O75056 VN1R17P-201ENST00000472048 1090 ntBASIC3.45□□□□□ -1.86
SDC3O75056 RPS4XP13-201ENST00000483219 789 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AC119751.4-201ENST00000507498 357 ntBASIC3.45□□□□□ -1.86
SDC3O75056 RNU6-885P-201ENST00000516607 104 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.45□□□□□ -1.86
SDC3O75056 AC109635.4-202ENST00000531666 412 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AC092747.2-201ENST00000545069 983 ntBASIC3.45□□□□□ -1.86
SDC3O75056 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.45□□□□□ -1.86
SDC3O75056 AL133457.1-201ENST00000564251 987 ntBASIC3.45□□□□□ -1.86
SDC3O75056 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.45□□□□□ -1.86
SDC3O75056 AC122134.1-202ENST00000569111 1201 ntBASIC3.45□□□□□ -1.86
SDC3O75056 MIR3186-201ENST00000577404 85 ntBASIC3.45□□□□□ -1.86
SDC3O75056 MIR3690-201ENST00000580266 75 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.45□□□□□ -1.86
SDC3O75056 AP003973.1-201ENST00000604639 691 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AC112220.2-201ENST00000605513 533 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AC006023.2-201ENST00000609916 167 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
SDC3O75056 AP003355.3-201ENST00000623465 114 ntBASIC3.45□□□□□ -1.86
SDC3O75056 AL512506.2-201ENST00000624472 458 ntBASIC3.45□□□□□ -1.86
SDC3O75056 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.45□□□□□ -1.86
SDC3O75056 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SDC3O75056 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.44□□□□□ -1.86
SDC3O75056 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC3O75056 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
SDC3O75056 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC3O75056 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC3O75056 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 AL645937.1-201ENST00000641739 1652 ntBASIC3.44□□□□□ -1.86
SDC3O75056 RNU6-251P-201ENST00000363235 104 ntBASIC3.44□□□□□ -1.86
SDC3O75056 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.44□□□□□ -1.86
SDC3O75056 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SDC3O75056 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
SDC3O75056 MIR122-201ENST00000385044 85 ntBASIC3.44□□□□□ -1.86
SDC3O75056 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.44□□□□□ -1.86
SDC3O75056 AL049610.1-201ENST00000423374 372 ntBASIC3.44□□□□□ -1.86
SDC3O75056 C1DP1-201ENST00000426049 402 ntBASIC3.44□□□□□ -1.86
SDC3O75056 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms