Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
COL5A3P25940 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
COL5A3P25940 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL5A3P25940 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.04□□□□□ -1.92
COL5A3P25940 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
COL5A3P25940 RNU6-482P-201ENST00000391068 107 ntBASIC3.04□□□□□ -1.92
COL5A3P25940 NAP1L4P3-201ENST00000432820 1147 ntBASIC3.04□□□□□ -1.92
COL5A3P25940 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.04□□□□□ -1.92
COL5A3P25940 AC132942.1-201ENST00000486753 483 ntBASIC3.04□□□□□ -1.92
COL5A3P25940 KATNBL1P4-201ENST00000503545 918 ntBASIC3.04□□□□□ -1.92
COL5A3P25940 AC108210.2-201ENST00000503681 201 ntBASIC3.04□□□□□ -1.92
COL5A3P25940 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC3.04□□□□□ -1.92
COL5A3P25940 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
COL5A3P25940 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.04□□□□□ -1.92
COL5A3P25940 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.04□□□□□ -1.92
COL5A3P25940 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.04□□□□□ -1.92
COL5A3P25940 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.04□□□□□ -1.92
COL5A3P25940 AC010809.3-201ENST00000621310 641 ntBASIC3.04□□□□□ -1.92
COL5A3P25940 AC110994.2-201ENST00000635481 492 ntBASIC3.04□□□□□ -1.92
COL5A3P25940 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL5A3P25940 MTCO1P9-201ENST00000505577 1534 ntBASIC3.03□□□□□ -1.92
COL5A3P25940 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL5A3P25940 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
COL5A3P25940 RNU6-233P-201ENST00000410845 141 ntBASIC3.03□□□□□ -1.92
COL5A3P25940 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.03□□□□□ -1.92
COL5A3P25940 HMGB1P15-201ENST00000453854 435 ntBASIC3.03□□□□□ -1.92
COL5A3P25940 RPL23AP14-201ENST00000468281 468 ntBASIC3.03□□□□□ -1.92
COL5A3P25940 AC026436.1-201ENST00000510537 270 ntBASIC3.03□□□□□ -1.92
COL5A3P25940 USP9YP5-201ENST00000511770 630 ntBASIC3.03□□□□□ -1.92
COL5A3P25940 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.03□□□□□ -1.92
COL5A3P25940 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.03□□□□□ -1.92
COL5A3P25940 AC046143.2-201ENST00000609789 160 ntBASIC3.03□□□□□ -1.92
COL5A3P25940 MIR1291-201ENST00000627649 87 ntBASIC3.03□□□□□ -1.92
COL5A3P25940 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
COL5A3P25940 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
COL5A3P25940 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL5A3P25940 XIAPP3-201ENST00000312918 795 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
COL5A3P25940 SNORA62.2-201ENST00000364672 152 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.02□□□□□ -1.93
COL5A3P25940 AC009318.2-201ENST00000610917 651 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL5A3P25940 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL5A3P25940 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.02□□□□□ -1.93
COL5A3P25940 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.02□□□□□ -1.93
COL5A3P25940 RNA5SP456-201ENST00000364002 114 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 Y_RNA.238-201ENST00000364441 102 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 SNORD6-201ENST00000365444 73 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.02□□□□□ -1.93
COL5A3P25940 FAT1P1-201ENST00000406588 507 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 AC018634.1-201ENST00000437554 401 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 AC011816.1-201ENST00000441346 546 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.02□□□□□ -1.93
COL5A3P25940 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.02□□□□□ -1.93
COL5A3P25940 RPL21P99-201ENST00000480369 423 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.02□□□□□ -1.93
COL5A3P25940 TRAV37-201ENST00000553906 342 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 AC061975.8-201ENST00000587058 721 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 AC012119.1-201ENST00000603184 222 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 AC026634.1-201ENST00000634369 198 ntBASIC3.02□□□□□ -1.93
COL5A3P25940 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
COL5A3P25940 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL5A3P25940 ATG3P1-201ENST00000419507 911 ntBASIC3.01□□□□□ -1.93
COL5A3P25940 AC114982.2-201ENST00000461396 358 ntBASIC3.01□□□□□ -1.93
COL5A3P25940 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.01□□□□□ -1.93
COL5A3P25940 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.01□□□□□ -1.93
COL5A3P25940 RNA5SP281-201ENST00000516504 135 ntBASIC3.01□□□□□ -1.93
COL5A3P25940 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
COL5A3P25940 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.01□□□□□ -1.93
COL5A3P25940 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.01□□□□□ -1.93
COL5A3P25940 MIR3186-201ENST00000577404 85 ntBASIC3.01□□□□□ -1.93
COL5A3P25940 NRBF2P1-201ENST00000587407 859 ntBASIC3.01□□□□□ -1.93
COL5A3P25940 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.01□□□□□ -1.93
COL5A3P25940 AC067852.7-201ENST00000623270 535 ntBASIC3.01□□□□□ -1.93
COL5A3P25940 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.01□□□□□ -1.93
COL5A3P25940 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.01□□□□□ -1.93
COL5A3P25940 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL5A3P25940 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL5A3P25940 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL5A3P25940 ZNF72P-201ENST00000425869 1908 ntBASIC3□□□□□ -1.93
COL5A3P25940 5S_rRNA.2-201ENST00000391293 112 ntBASIC3□□□□□ -1.93
COL5A3P25940 AL158825.1-201ENST00000414735 521 ntBASIC3□□□□□ -1.93
COL5A3P25940 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC3□□□□□ -1.93
COL5A3P25940 AL031736.2-201ENST00000426573 787 ntBASIC3□□□□□ -1.93
COL5A3P25940 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
COL5A3P25940 AC133134.1-201ENST00000466800 359 ntBASIC3□□□□□ -1.93
COL5A3P25940 AC092436.1-201ENST00000506450 503 ntBASIC3□□□□□ -1.93
COL5A3P25940 MTND4P2-201ENST00000507767 1203 ntBASIC3□□□□□ -1.93
COL5A3P25940 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
COL5A3P25940 OR7K1P-201ENST00000546439 926 ntBASIC3□□□□□ -1.93
COL5A3P25940 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL5A3P25940 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3□□□□□ -1.93
COL5A3P25940 AC105036.1-201ENST00000566222 271 ntBASIC3□□□□□ -1.93
COL5A3P25940 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3□□□□□ -1.93
COL5A3P25940 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC3□□□□□ -1.93
COL5A3P25940 AP006248.2-201ENST00000623309 592 ntBASIC3□□□□□ -1.93
COL5A3P25940 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3□□□□□ -1.93
COL5A3P25940 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3□□□□□ -1.93
COL5A3P25940 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms