Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FO082796.1-201ENST00000523795 183 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX2P35548 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX2P35548 AC078814.3-201ENST00000553036 491 ntBASIC4.69□□□□□ -1.66
MSX2P35548 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.69□□□□□ -1.66
MSX2P35548 AL109766.1-201ENST00000555080 552 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX2P35548 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.69□□□□□ -1.66
MSX2P35548 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.69□□□□□ -1.66
MSX2P35548 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.69□□□□□ -1.66
MSX2P35548 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX2P35548 AC055876.1-202ENST00000567053 138 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.69□□□□□ -1.66
MSX2P35548 LARP7P2-201ENST00000575306 125 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AC015917.1-201ENST00000579654 510 ntBASIC4.69□□□□□ -1.66
MSX2P35548 VN1R80P-201ENST00000597126 338 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AC104687.2-201ENST00000604442 342 ntBASIC4.69□□□□□ -1.66
MSX2P35548 SNORD91B-202ENST00000608459 222 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AL512624.1-201ENST00000613638 469 ntBASIC4.69□□□□□ -1.66
MSX2P35548 uc_338.18-201ENST00000615451 175 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AL160413.1-201ENST00000622780 310 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AC138649.5-201ENST00000637456 137 ntBASIC4.69□□□□□ -1.66
MSX2P35548 AL049767.1-202ENST00000637826 242 ntBASIC4.69□□□□□ -1.66
MSX2P35548 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
MSX2P35548 AC093535.2-201ENST00000624769 2326 ntBASIC4.69□□□□□ -1.66
MSX2P35548 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.69□□□□□ -1.66
MSX2P35548 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.69□□□□□ -1.66
MSX2P35548 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
MSX2P35548 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
MSX2P35548 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 ASNSP1-201ENST00000518311 1939 ntBASIC4.68□□□□□ -1.66
MSX2P35548 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.68□□□□□ -1.66
MSX2P35548 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
MSX2P35548 AP000542.2-201ENST00000623199 6179 ntBASIC4.68□□□□□ -1.66
MSX2P35548 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.68□□□□□ -1.66
MSX2P35548 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
MSX2P35548 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 AC068050.1-201ENST00000394891 380 ntBASIC4.68□□□□□ -1.66
MSX2P35548 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.68□□□□□ -1.66
MSX2P35548 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
MSX2P35548 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.68□□□□□ -1.66
MSX2P35548 AC127391.1-201ENST00000411737 98 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.68□□□□□ -1.66
MSX2P35548 CYCSP6-201ENST00000434498 302 ntBASIC4.68□□□□□ -1.66
MSX2P35548 RPS26P2-201ENST00000440331 348 ntBASIC4.68□□□□□ -1.66
MSX2P35548 Z80107.2-201ENST00000445127 392 ntBASIC4.68□□□□□ -1.66
MSX2P35548 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AC093278.1-201ENST00000494700 600 ntBASIC4.68□□□□□ -1.66
MSX2P35548 RPS4XP18-201ENST00000495480 763 ntBASIC4.68□□□□□ -1.66
MSX2P35548 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.68□□□□□ -1.66
MSX2P35548 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.68□□□□□ -1.66
MSX2P35548 AC010350.1-201ENST00000504908 231 ntBASIC4.68□□□□□ -1.66
MSX2P35548 RPS4XP20-201ENST00000505751 772 ntBASIC4.68□□□□□ -1.66
MSX2P35548 Vault.3-201ENST00000516676 95 ntBASIC4.68□□□□□ -1.66
MSX2P35548 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC4.68□□□□□ -1.66
MSX2P35548 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.68□□□□□ -1.66
MSX2P35548 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 AC051619.2-201ENST00000559063 397 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AC034105.3-201ENST00000565294 442 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.68□□□□□ -1.66
MSX2P35548 MAGOH2P-202ENST00000584384 429 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AL161729.3-201ENST00000603533 673 ntBASIC4.68□□□□□ -1.66
MSX2P35548 COX6CP4-201ENST00000605798 228 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AL008729.2-201ENST00000606393 473 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AL445222.1-201ENST00000607259 628 ntBASIC4.68□□□□□ -1.66
MSX2P35548 RN7SL787P-201ENST00000613000 284 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AL133173.2-201ENST00000614270 90 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.68□□□□□ -1.66
MSX2P35548 AC005086.4-201ENST00000623065 213 ntBASIC4.68□□□□□ -1.66
MSX2P35548 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.68□□□□□ -1.66
MSX2P35548 AC074101.1-201ENST00000637861 241 ntBASIC4.68□□□□□ -1.66
MSX2P35548 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
MSX2P35548 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
MSX2P35548 AC104118.1-201ENST00000607625 1589 ntBASIC4.68□□□□□ -1.66
MSX2P35548 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 NUP58P1-201ENST00000502546 1738 ntBASIC4.68□□□□□ -1.66
MSX2P35548 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
MSX2P35548 CKAP2P1-201ENST00000555477 2049 ntBASIC4.68□□□□□ -1.66
MSX2P35548 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.68□□□□□ -1.66
MSX2P35548 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.68□□□□□ -1.66
MSX2P35548 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
MSX2P35548 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
MSX2P35548 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
MSX2P35548 AL645937.1-201ENST00000641739 1652 ntBASIC4.67□□□□□ -1.66
MSX2P35548 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.67□□□□□ -1.66
MSX2P35548 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
MSX2P35548 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
MSX2P35548 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms