Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SMARCA1P28370 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SMARCA1P28370 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
SMARCA1P28370 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
SMARCA1P28370 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.9□□□□□ -1.62
SMARCA1P28370 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
SMARCA1P28370 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
SMARCA1P28370 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.9□□□□□ -1.63
SMARCA1P28370 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SMARCA1P28370 MIR383-201ENST00000362257 73 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 RNU6-1119P-201ENST00000384349 108 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 ARF4P3-201ENST00000397387 509 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 MTCYBP36-201ENST00000404146 440 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 ZNF603P-201ENST00000405613 487 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 HDGFP1-201ENST00000405943 252 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC004987.3-201ENST00000413879 771 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.9□□□□□ -1.63
SMARCA1P28370 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SMARCA1P28370 RPS3AP44-201ENST00000425466 790 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 COX6CP15-201ENST00000426313 211 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 OR4F13P-201ENST00000428478 931 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.9□□□□□ -1.63
SMARCA1P28370 RPL23AP16-201ENST00000441715 421 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SMARCA1P28370 CFTRP1-201ENST00000456646 183 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 MEMO1P3-201ENST00000459811 302 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.9□□□□□ -1.63
SMARCA1P28370 RPS27AP13-201ENST00000498403 237 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AC108145.1-201ENST00000503770 153 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC104986.1-201ENST00000517978 436 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.9□□□□□ -1.63
SMARCA1P28370 OR4A45P-201ENST00000529954 901 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC025884.1-201ENST00000556034 378 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 PARP1P2-201ENST00000556806 195 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AC141257.3-201ENST00000572906 215 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AC023575.1-201ENST00000580510 358 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC079089.3-201ENST00000603094 673 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 BNIP3P11-201ENST00000603878 563 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AC115621.1-201ENST00000604653 858 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AC073968.1-201ENST00000618594 637 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 AL359715.5-201ENST00000623431 443 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
SMARCA1P28370 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.63
SMARCA1P28370 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.9□□□□□ -1.63
SMARCA1P28370 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.9□□□□□ -1.63
SMARCA1P28370 MTND4P26-201ENST00000415971 1359 ntBASIC4.9□□□□□ -1.63
SMARCA1P28370 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
SMARCA1P28370 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMARCA1P28370 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SMARCA1P28370 KPNA2P2-201ENST00000419546 1489 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 ZNF33CP-201ENST00000432492 2030 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMARCA1P28370 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.89□□□□□ -1.63
SMARCA1P28370 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SMARCA1P28370 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.89□□□□□ -1.63
SMARCA1P28370 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.89□□□□□ -1.63
SMARCA1P28370 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
SMARCA1P28370 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.89□□□□□ -1.63
SMARCA1P28370 RNU6-777P-201ENST00000364265 104 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 RNU4-91P-201ENST00000364778 135 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 RNU6-1279P-201ENST00000383917 103 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 RNU6-648P-201ENST00000410190 107 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 RNU2-16P-201ENST00000410712 136 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 HMGB1P11-201ENST00000413899 637 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AC083875.1-201ENST00000419509 405 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AC092017.2-201ENST00000427600 362 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SMARCA1P28370 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AL831737.1-201ENST00000441288 271 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AL592447.1-201ENST00000447592 540 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 TPT1P7-201ENST00000458300 517 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AC091564.1-201ENST00000464563 479 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 RPS15AP17-201ENST00000470598 390 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.89□□□□□ -1.63
SMARCA1P28370 TMEM251P1-201ENST00000503717 318 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC4.89□□□□□ -1.63
SMARCA1P28370 IGHV3-32-201ENST00000519182 355 ntBASIC4.89□□□□□ -1.63
SMARCA1P28370 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.89□□□□□ -1.63
SMARCA1P28370 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.89□□□□□ -1.63
SMARCA1P28370 DEFB109D-201ENST00000529497 240 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms