Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC6.6□□□□□ -1.35
COL9A1P20849 AC010631.1-201ENST00000474150 156 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC6.6□□□□□ -1.35
COL9A1P20849 TRAPPC2P7-201ENST00000509650 231 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC6.6□□□□□ -1.35
COL9A1P20849 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC6.6□□□□□ -1.35
COL9A1P20849 TRAV32-201ENST00000553993 340 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 FXNP1-201ENST00000555153 337 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC6.6□□□□□ -1.35
COL9A1P20849 RN7SL208P-201ENST00000577964 296 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 RN7SL708P-201ENST00000580952 299 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.6□□□□□ -1.35
COL9A1P20849 AC098826.3-201ENST00000603823 466 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 FO393422.1-201ENST00000603908 708 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 AL450226.2-201ENST00000622913 439 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 CYP4F35P-202ENST00000636121 390 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 LINC02495-203ENST00000636704 242 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.6□□□□□ -1.35
COL9A1P20849 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC6.6□□□□□ -1.35
COL9A1P20849 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC6.6□□□□□ -1.35
COL9A1P20849 AC008725.1-201ENST00000605123 2263 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC6.6□□□□□ -1.35
COL9A1P20849 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 NCOA4P3-201ENST00000513203 1877 ntBASIC6.6□□□□□ -1.35
COL9A1P20849 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL9A1P20849 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 AC009948.3-201ENST00000603415 1798 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 ACTA2-AS1-201ENST00000437930 2450 ntTSL 2 BASIC6.59□□□□□ -1.35
COL9A1P20849 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.59□□□□□ -1.35
COL9A1P20849 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
COL9A1P20849 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC6.59□□□□□ -1.35
COL9A1P20849 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 DDX10P1-201ENST00000448545 1933 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 SLC14A2-203ENST00000586448 3540 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COL9A1P20849 RNU6-371P-201ENST00000364283 108 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 RNY3P4-201ENST00000384428 101 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
COL9A1P20849 MIR1204-201ENST00000408388 67 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 MIR1203-201ENST00000408812 85 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 EI24P1-201ENST00000416584 867 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COL9A1P20849 AC023141.3-201ENST00000436698 278 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 AL162389.1-201ENST00000449233 177 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 AL133244.1-201ENST00000456007 258 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 RPS29P22-201ENST00000472363 168 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 RN7SL346P-201ENST00000491561 294 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 IGHVII-62-1-201ENST00000519283 235 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC6.59□□□□□ -1.35
COL9A1P20849 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC6.59□□□□□ -1.35
COL9A1P20849 RN7SL475P-201ENST00000583379 298 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC6.59□□□□□ -1.35
COL9A1P20849 AC034102.8-201ENST00000615146 484 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 AL031601.2-202ENST00000622650 282 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.59□□□□□ -1.35
COL9A1P20849 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL9A1P20849 UG0898H09-202ENST00000623646 7040 ntBASIC6.59□□□□□ -1.35
COL9A1P20849 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
COL9A1P20849 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.59□□□□□ -1.35
COL9A1P20849 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC6.59□□□□□ -1.35
COL9A1P20849 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL9A1P20849 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL9A1P20849 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL9A1P20849 AC092821.2-201ENST00000545710 2042 ntBASIC6.59□□□□□ -1.36
COL9A1P20849 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL9A1P20849 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL9A1P20849 MFSD8-219ENST00000641228 2559 ntBASIC6.59□□□□□ -1.36
COL9A1P20849 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL9A1P20849 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.58□□□□□ -1.36
COL9A1P20849 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC6.58□□□□□ -1.36
COL9A1P20849 AC007529.1-201ENST00000418574 2178 ntBASIC6.58□□□□□ -1.36
COL9A1P20849 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.58□□□□□ -1.36
COL9A1P20849 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL9A1P20849 CRNKL1-207ENST00000536226 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL9A1P20849 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
COL9A1P20849 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
COL9A1P20849 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL9A1P20849 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL9A1P20849 RNU4-90P-201ENST00000362773 141 ntBASIC6.58□□□□□ -1.36
COL9A1P20849 AL645733.1-201ENST00000402250 217 ntBASIC6.58□□□□□ -1.36
COL9A1P20849 RPS16P5-201ENST00000406501 404 ntBASIC6.58□□□□□ -1.36
COL9A1P20849 MTCYBP2-201ENST00000407745 171 ntBASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms