Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 FGF7P5-201ENST00000441829 291 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 RPS3AP12-201ENST00000443616 753 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 HMGB1P48-201ENST00000446155 598 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD4P09016 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXD4P09016 RPL31P61-201ENST00000496160 376 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC090071.1-201ENST00000507713 644 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 HMGN1P11-201ENST00000508668 303 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC118282.2-201ENST00000508739 374 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC093853.1-201ENST00000515689 483 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 IGKV2-38-201ENST00000517443 247 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC008802.1-201ENST00000519121 791 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 PTP4A1P6-201ENST00000531034 478 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXD4P09016 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXD4P09016 AADACP1-206ENST00000561502 1193 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXD4P09016 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC099489.2-201ENST00000574976 260 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXD4P09016 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 AC021171.1-201ENST00000603137 706 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AL353778.1-201ENST00000603149 408 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 DUXAP3-201ENST00000603616 594 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC021749.1-201ENST00000604322 607 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC012468.1-201ENST00000604888 430 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AP000255.1-201ENST00000610276 676 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC018926.3-201ENST00000618841 406 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC079416.3-201ENST00000624479 549 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXD4P09016 XPOTP1-201ENST00000443317 2398 ntBASIC3.49□□□□□ -1.85
HOXD4P09016 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD4P09016 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD4P09016 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD4P09016 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD4P09016 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD4P09016 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXD4P09016 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD4P09016 AP005901.5-201ENST00000545779 1796 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD4P09016 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD4P09016 SGO1P1-201ENST00000603525 1447 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD4P09016 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.48□□□□□ -1.85
HOXD4P09016 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
HOXD4P09016 SNORA5A-201ENST00000384111 134 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 SNORA9-201ENST00000384215 133 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 RNY3P9-201ENST00000384727 106 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 MIR483-201ENST00000385070 76 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 MIR34B-201ENST00000385076 84 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 MIR16-1-201ENST00000385271 89 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 SFR1P1-201ENST00000403720 688 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD4P09016 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 AL049610.1-201ENST00000423374 372 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD4P09016 AL591419.1-201ENST00000427423 339 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 MTCO1P3-201ENST00000429327 192 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 RPS6P15-201ENST00000431996 751 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD4P09016 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD4P09016 AC007327.1-201ENST00000447461 264 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 MTCO3P20-201ENST00000454926 688 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 NECAP1P2-201ENST00000455668 727 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 AC015724.1-201ENST00000478577 156 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 GAPDHP39-201ENST00000481866 979 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 AC126121.1-201ENST00000482313 553 ntBASIC3.48□□□□□ -1.85
HOXD4P09016 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.48□□□□□ -1.85
HOXD4P09016 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.48□□□□□ -1.85
HOXD4P09016 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.48□□□□□ -1.85
HOXD4P09016 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms