Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 RPA2P1-201ENST00000556557 721 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC020661.2-201ENST00000560114 134 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 TXNP4-201ENST00000575018 310 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC009570.1-201ENST00000609599 745 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 U2.17-201ENST00000611454 95 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 MIR6809-201ENST00000612189 116 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AL627230.1-201ENST00000613077 211 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 MIR6778-201ENST00000617912 73 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 SNX18P12-201ENST00000624821 759 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AC103710.2-202ENST00000641454 2853 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
CCDC140Q96MF4 AL137003.2-201ENST00000606924 2538 ntBASIC4.6□□□□□ -1.67
CCDC140Q96MF4 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 SELENOWP1-201ENST00000322792 252 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RPL32P3-201ENST00000359025 275 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RNU6-76P-201ENST00000384060 104 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RNU6-393P-201ENST00000384475 107 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 SNORD116-29-201ENST00000384516 83 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 MIR124-3-201ENST00000384866 87 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 MIR450B-201ENST00000401182 78 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 MTCYBP4-201ENST00000401524 249 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AL133388.1-201ENST00000404509 287 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 BTF3L4P3-201ENST00000418879 476 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RPS12P17-201ENST00000438591 377 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 ATP6V1E1P1-201ENST00000439215 681 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 ATP5LP2-201ENST00000440646 311 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC090804.1-201ENST00000448870 490 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 NIPA2P5-201ENST00000452282 464 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 GEMIN2P1-201ENST00000454246 752 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC023194.2-201ENST00000465398 406 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC012181.1-201ENST00000479895 423 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RPS27AP13-201ENST00000498403 237 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RNU6-352P-201ENST00000516908 107 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RNU6-677P-201ENST00000516914 101 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RNA5SP340-201ENST00000517132 107 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 SNORA31.22-201ENST00000517204 135 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RNA5SP454-201ENST00000517231 127 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC018630.1-201ENST00000541376 925 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC135001.1-201ENST00000544546 283 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 MIR3171-201ENST00000584270 74 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC008507.3-201ENST00000585753 472 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC006116.10-201ENST00000591836 581 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AL031320.1-201ENST00000604177 357 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC080078.3-201ENST00000605407 463 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AL359547.2-201ENST00000615810 418 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC245014.3-201ENST00000618589 347 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 AC103705.1-201ENST00000619013 241 ntBASIC4.59□□□□□ -1.67
CCDC140Q96MF4 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms