Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.69□□□□□ -1.98
COL6A3P12111 RNU6-295P-201ENST00000516901 104 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 NARSP2-201ENST00000518524 679 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC2.69□□□□□ -1.98
COL6A3P12111 AL390334.1-201ENST00000556395 450 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 U4.3-201ENST00000621047 82 ntBASIC2.69□□□□□ -1.98
COL6A3P12111 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL6A3P12111 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC2.68□□□□□ -1.98
COL6A3P12111 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC2.68□□□□□ -1.98
COL6A3P12111 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
COL6A3P12111 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.68□□□□□ -1.98
COL6A3P12111 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC2.68□□□□□ -1.98
COL6A3P12111 IL7R-208ENST00000511982 612 ntTSL 2 BASIC2.68□□□□□ -1.98
COL6A3P12111 AC096725.1-201ENST00000514266 313 ntBASIC2.68□□□□□ -1.98
COL6A3P12111 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC2.68□□□□□ -1.98
COL6A3P12111 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC2.68□□□□□ -1.98
COL6A3P12111 AC063952.1-203ENST00000634410 658 ntBASIC2.68□□□□□ -1.98
COL6A3P12111 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC2.68□□□□□ -1.98
COL6A3P12111 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL6A3P12111 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
COL6A3P12111 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL6A3P12111 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL6A3P12111 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL6A3P12111 RNU6-661P-201ENST00000362409 107 ntBASIC2.68□□□□□ -1.98
COL6A3P12111 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC2.68□□□□□ -1.98
COL6A3P12111 AC126177.3-201ENST00000551839 688 ntBASIC2.68□□□□□ -1.98
COL6A3P12111 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.68□□□□□ -1.98
COL6A3P12111 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.68□□□□□ -1.98
COL6A3P12111 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL6A3P12111 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.68□□□□□ -1.98
COL6A3P12111 AC018634.1-201ENST00000437554 401 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.67□□□□□ -1.98
COL6A3P12111 AP000942.1-201ENST00000463969 747 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 ACTG1P13-201ENST00000486987 1043 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 LTV1P1-201ENST00000510683 1237 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 RN7SKP24-201ENST00000515888 284 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.67□□□□□ -1.98
COL6A3P12111 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.67□□□□□ -1.98
COL6A3P12111 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL6A3P12111 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL6A3P12111 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL6A3P12111 AL592494.2-201ENST00000425455 1548 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
COL6A3P12111 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
COL6A3P12111 AC104297.1-201ENST00000393779 870 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 YPEL5P1-201ENST00000419731 367 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 ST13P20-201ENST00000447996 1065 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL6A3P12111 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.67□□□□□ -1.98
COL6A3P12111 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL6A3P12111 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
COL6A3P12111 AL023284.1-201ENST00000403956 276 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 SETP15-201ENST00000412724 337 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 CACYBPP2-201ENST00000453625 678 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 RNA5SP61-201ENST00000516453 100 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 AC025881.1-201ENST00000518851 512 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 AC011611.5-201ENST00000552477 578 ntBASIC2.67□□□□□ -1.98
COL6A3P12111 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC2.67□□□□□ -1.98
COL6A3P12111 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
COL6A3P12111 MIR26A1-201ENST00000362205 77 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 ISCA1P2-201ENST00000438679 421 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 AP001636.2-201ENST00000525517 696 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC2.66□□□□□ -1.98
COL6A3P12111 WDR61-205ENST00000558459 884 ntTSL 3 BASIC2.66□□□□□ -1.98
COL6A3P12111 AC087190.4-201ENST00000574616 8334 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 MIR6873-201ENST00000622788 63 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.66□□□□□ -1.98
COL6A3P12111 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC2.66□□□□□ -1.98
COL6A3P12111 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL6A3P12111 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC2.66□□□□□ -1.98
COL6A3P12111 AP1B1P2-201ENST00000416196 106 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 TRBV26-201ENST00000456572 344 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2.66□□□□□ -1.98
COL6A3P12111 OR1AB1P-201ENST00000585564 761 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 LINC00216-201ENST00000623548 1126 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 AC019080.5-201ENST00000624891 757 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC2.66□□□□□ -1.98
COL6A3P12111 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL6A3P12111 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL6A3P12111 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL6A3P12111 CUL1P1-201ENST00000509510 2425 ntBASIC2.66□□□□□ -1.98
COL6A3P12111 RN7SKP32-201ENST00000410167 303 ntBASIC2.65□□□□□ -1.98
COL6A3P12111 AL591704.1-201ENST00000432574 275 ntBASIC2.65□□□□□ -1.98
COL6A3P12111 AC021733.2-201ENST00000518830 497 ntBASIC2.65□□□□□ -1.98
COL6A3P12111 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.65□□□□□ -1.98
COL6A3P12111 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.65□□□□□ -1.98
COL6A3P12111 AC010300.1-201ENST00000600671 5134 ntBASIC2.65□□□□□ -1.98
COL6A3P12111 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.65□□□□□ -1.99
COL6A3P12111 AC006539.3-201ENST00000454258 129 ntBASIC2.65□□□□□ -1.99
COL6A3P12111 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC2.65□□□□□ -1.99
COL6A3P12111 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.65□□□□□ -1.99
COL6A3P12111 RMST_9.1-201ENST00000619945 193 ntBASIC2.65□□□□□ -1.99
COL6A3P12111 Z82217.1-201ENST00000625157 8149 ntBASIC2.65□□□□□ -1.99
COL6A3P12111 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
COL6A3P12111 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC2.65□□□□□ -1.99
COL6A3P12111 BTF3P4-201ENST00000418852 495 ntBASIC2.65□□□□□ -1.99
COL6A3P12111 AC010881.1-201ENST00000433830 235 ntBASIC2.65□□□□□ -1.99
COL6A3P12111 AC009263.1-201ENST00000441193 1239 ntBASIC2.65□□□□□ -1.99
COL6A3P12111 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.65□□□□□ -1.99
COL6A3P12111 AL158196.1-201ENST00000616786 434 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms