Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PROM1O43490 ZFRP1-201ENST00000457579 2970 ntBASIC4.54□□□□□ -1.68
PROM1O43490 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
PROM1O43490 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PROM1O43490 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
PROM1O43490 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PROM1O43490 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PROM1O43490 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PROM1O43490 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PROM1O43490 RNU6-289P-201ENST00000364093 107 ntBASIC4.53□□□□□ -1.68
PROM1O43490 RNU1-85P-201ENST00000364127 164 ntBASIC4.53□□□□□ -1.68
PROM1O43490 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 U3.30-201ENST00000391308 210 ntBASIC4.53□□□□□ -1.68
PROM1O43490 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
PROM1O43490 PRRC2CP1-201ENST00000404428 159 ntBASIC4.53□□□□□ -1.68
PROM1O43490 AL590002.1-201ENST00000406554 418 ntBASIC4.53□□□□□ -1.68
PROM1O43490 FCF1P10-201ENST00000407590 479 ntBASIC4.53□□□□□ -1.68
PROM1O43490 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.53□□□□□ -1.68
PROM1O43490 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.53□□□□□ -1.68
PROM1O43490 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC4.53□□□□□ -1.68
PROM1O43490 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 AL121601.2-201ENST00000438019 707 ntBASIC4.53□□□□□ -1.68
PROM1O43490 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 TPT1P12-201ENST00000448968 492 ntBASIC4.53□□□□□ -1.68
PROM1O43490 PSPHP1-201ENST00000450062 261 ntBASIC4.53□□□□□ -1.68
PROM1O43490 RPS5P7-201ENST00000456664 608 ntBASIC4.53□□□□□ -1.68
PROM1O43490 OR6K1P-201ENST00000456766 971 ntBASIC4.53□□□□□ -1.68
PROM1O43490 ACTR3P3-201ENST00000480448 893 ntBASIC4.53□□□□□ -1.68
PROM1O43490 AC091133.4-201ENST00000511142 308 ntBASIC4.53□□□□□ -1.68
PROM1O43490 ARL2BPP6-201ENST00000512757 439 ntBASIC4.53□□□□□ -1.68
PROM1O43490 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 AC010342.1-201ENST00000514047 877 ntBASIC4.53□□□□□ -1.68
PROM1O43490 RN7SKP96-201ENST00000516948 297 ntBASIC4.53□□□□□ -1.68
PROM1O43490 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.53□□□□□ -1.68
PROM1O43490 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.53□□□□□ -1.68
PROM1O43490 AC133555.2-201ENST00000550213 292 ntBASIC4.53□□□□□ -1.68
PROM1O43490 AC009117.1-201ENST00000563948 554 ntBASIC4.53□□□□□ -1.68
PROM1O43490 RN7SL176P-201ENST00000580352 264 ntBASIC4.53□□□□□ -1.68
PROM1O43490 MIR544B-201ENST00000582372 78 ntBASIC4.53□□□□□ -1.68
PROM1O43490 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.53□□□□□ -1.68
PROM1O43490 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.53□□□□□ -1.68
PROM1O43490 AC004067.1-201ENST00000608733 700 ntBASIC4.53□□□□□ -1.68
PROM1O43490 FAM27B-201ENST00000610601 213 ntBASIC4.53□□□□□ -1.68
PROM1O43490 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 AC110994.2-201ENST00000635481 492 ntBASIC4.53□□□□□ -1.68
PROM1O43490 MIR6863-201ENST00000636112 90 ntBASIC4.53□□□□□ -1.68
PROM1O43490 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 AL359922.3-201ENST00000624779 1670 ntBASIC4.53□□□□□ -1.68
PROM1O43490 SALL4P2-201ENST00000423288 2910 ntBASIC4.53□□□□□ -1.68
PROM1O43490 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.53□□□□□ -1.68
PROM1O43490 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.53□□□□□ -1.68
PROM1O43490 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.53□□□□□ -1.68
PROM1O43490 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
PROM1O43490 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
PROM1O43490 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
PROM1O43490 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
PROM1O43490 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PROM1O43490 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
PROM1O43490 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.52□□□□□ -1.69
PROM1O43490 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.52□□□□□ -1.69
PROM1O43490 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.52□□□□□ -1.69
PROM1O43490 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PROM1O43490 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
PROM1O43490 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.52□□□□□ -1.69
PROM1O43490 Y_RNA.9-201ENST00000362354 101 ntBASIC4.52□□□□□ -1.69
PROM1O43490 RNU1-94P-201ENST00000362627 173 ntBASIC4.52□□□□□ -1.69
PROM1O43490 Y_RNA.372-201ENST00000365599 102 ntBASIC4.52□□□□□ -1.69
PROM1O43490 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.52□□□□□ -1.69
PROM1O43490 RNU6-398P-201ENST00000384143 109 ntBASIC4.52□□□□□ -1.69
PROM1O43490 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PROM1O43490 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.52□□□□□ -1.69
PROM1O43490 AC008280.1-201ENST00000418851 412 ntBASIC4.52□□□□□ -1.69
PROM1O43490 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.52□□□□□ -1.69
PROM1O43490 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.52□□□□□ -1.69
PROM1O43490 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.52□□□□□ -1.69
PROM1O43490 AC016712.1-201ENST00000431088 378 ntBASIC4.52□□□□□ -1.69
PROM1O43490 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.52□□□□□ -1.69
PROM1O43490 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.52□□□□□ -1.69
PROM1O43490 NFU1P2-201ENST00000448700 469 ntBASIC4.52□□□□□ -1.69
PROM1O43490 AC010733.1-201ENST00000451515 401 ntBASIC4.52□□□□□ -1.69
PROM1O43490 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.52□□□□□ -1.69
PROM1O43490 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.52□□□□□ -1.69
PROM1O43490 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.52□□□□□ -1.69
PROM1O43490 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms