Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HCG11-201ENST00000411553 5696 ntBASIC15.55■□□□□ 0.08
FOXA2Q9Y261 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC15.54■□□□□ 0.08
FOXA2Q9Y261 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 AC124283.5-201ENST00000624661 1809 ntBASIC15.53■□□□□ 0.08
FOXA2Q9Y261 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 NME1-207ENST00000480143 964 ntTSL 2 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 AC069544.1-201ENST00000609399 999 ntBASIC15.53■□□□□ 0.08
FOXA2Q9Y261 AL121829.2-201ENST00000620908 328 ntBASIC15.53■□□□□ 0.08
FOXA2Q9Y261 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA2Q9Y261 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 THEM4-205ENST00000489410 643 ntTSL 2 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 PRKY-204ENST00000533551 1019 ntBASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms