Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMD1Q9UGP4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMD1Q9UGP4 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 AC083849.1-201ENST00000615227 514 ntBASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMD1Q9UGP4 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMD1Q9UGP4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMD1Q9UGP4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMD1Q9UGP4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIMD1Q9UGP4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIMD1Q9UGP4 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LIMD1Q9UGP4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.02■□□□□ 0.8
LIMD1Q9UGP4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.02■□□□□ 0.8
LIMD1Q9UGP4 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMD1Q9UGP4 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIMD1Q9UGP4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIMD1Q9UGP4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LIMD1Q9UGP4 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LIMD1Q9UGP4 LINC01311-201ENST00000565162 1445 ntBASIC20.02■□□□□ 0.79
LIMD1Q9UGP4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.79
LIMD1Q9UGP4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.02■□□□□ 0.79
LIMD1Q9UGP4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 ATP5G2P1-201ENST00000433580 426 ntBASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 CKBP1-201ENST00000565489 1086 ntBASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 HYMAI.1-201ENST00000620949 238 ntBASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 LINC01465-201ENST00000408887 1940 ntBASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LIMD1Q9UGP4 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 AC092720.2-201ENST00000602388 1665 ntBASIC20■□□□□ 0.79
LIMD1Q9UGP4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20■□□□□ 0.79
LIMD1Q9UGP4 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LIMD1Q9UGP4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms