Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 C2orf69P3-201ENST00000565542 1120 ntBASIC19.32■□□□□ 0.68
DKK3Q9UBP4 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 AC145285.6-201ENST00000604632 637 ntBASIC19.32■□□□□ 0.68
DKK3Q9UBP4 AC010947.1-201ENST00000623454 693 ntBASIC19.32■□□□□ 0.68
DKK3Q9UBP4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 CYP2D8P-201ENST00000433633 1490 ntBASIC19.32■□□□□ 0.68
DKK3Q9UBP4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
DKK3Q9UBP4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 PRSS44-201ENST00000515154 1146 ntBASIC19.31■□□□□ 0.68
DKK3Q9UBP4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
DKK3Q9UBP4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 TSPY14P-201ENST00000303979 915 ntBASIC19.3■□□□□ 0.68
DKK3Q9UBP4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 CKBP1-201ENST00000565489 1086 ntBASIC19.3■□□□□ 0.68
DKK3Q9UBP4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.3■□□□□ 0.68
DKK3Q9UBP4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
DKK3Q9UBP4 AL158211.5-201ENST00000623583 2518 ntBASIC19.29■□□□□ 0.68
DKK3Q9UBP4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 EGLN1P1-201ENST00000531623 762 ntBASIC19.29■□□□□ 0.68
DKK3Q9UBP4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 LINC01568-207ENST00000641790 1380 ntBASIC19.29■□□□□ 0.68
DKK3Q9UBP4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
DKK3Q9UBP4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms