Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 AC006970.2-201ENST00000450065 779 ntBASIC17.57■□□□□ 0.4
DDX28Q9NUL7 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 AP000997.3-201ENST00000623333 2250 ntBASIC17.57■□□□□ 0.4
DDX28Q9NUL7 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
DDX28Q9NUL7 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 CDCA4P2-201ENST00000441182 718 ntBASIC17.56■□□□□ 0.4
DDX28Q9NUL7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 AC012313.1-201ENST00000593393 3059 ntBASIC17.56■□□□□ 0.4
DDX28Q9NUL7 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
DDX28Q9NUL7 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 AL691432.2-201ENST00000607222 2038 ntBASIC17.55■□□□□ 0.4
DDX28Q9NUL7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 AL512625.2-201ENST00000417533 625 ntBASIC17.55■□□□□ 0.4
DDX28Q9NUL7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 AC010980.2-201ENST00000587099 1412 ntBASIC17.55■□□□□ 0.4
DDX28Q9NUL7 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
DDX28Q9NUL7 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.54■□□□□ 0.4
DDX28Q9NUL7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
DDX28Q9NUL7 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms