Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC24.48■■□□□ 1.51
USP42Q9H9J4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC24.48■■□□□ 1.51
USP42Q9H9J4 AC012313.10-201ENST00000623509 926 ntBASIC24.48■■□□□ 1.51
USP42Q9H9J4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
USP42Q9H9J4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP42Q9H9J4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP42Q9H9J4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
USP42Q9H9J4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
USP42Q9H9J4 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USP42Q9H9J4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC24.47■■□□□ 1.51
USP42Q9H9J4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC24.47■■□□□ 1.51
USP42Q9H9J4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
USP42Q9H9J4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC24.47■■□□□ 1.51
USP42Q9H9J4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC24.47■■□□□ 1.51
USP42Q9H9J4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC24.47■■□□□ 1.51
USP42Q9H9J4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC24.47■■□□□ 1.51
USP42Q9H9J4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC24.47■■□□□ 1.51
USP42Q9H9J4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USP42Q9H9J4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC24.47■■□□□ 1.51
USP42Q9H9J4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
USP42Q9H9J4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP42Q9H9J4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP42Q9H9J4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP42Q9H9J4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP42Q9H9J4 STARP1-201ENST00000397973 869 ntBASIC24.46■■□□□ 1.51
USP42Q9H9J4 AP000523.1-201ENST00000398242 1049 ntBASIC24.46■■□□□ 1.51
USP42Q9H9J4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP42Q9H9J4 PHB2-202ENST00000440277 996 ntTSL 5 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
USP42Q9H9J4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP42Q9H9J4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
USP42Q9H9J4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
USP42Q9H9J4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
USP42Q9H9J4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
USP42Q9H9J4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC24.45■■□□□ 1.5
USP42Q9H9J4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC24.45■■□□□ 1.5
USP42Q9H9J4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
USP42Q9H9J4 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP42Q9H9J4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
USP42Q9H9J4 ATP5G2P1-201ENST00000433580 426 ntBASIC24.45■■□□□ 1.5
USP42Q9H9J4 NEK4P2-201ENST00000580004 1012 ntBASIC24.45■■□□□ 1.5
USP42Q9H9J4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC24.45■■□□□ 1.5
USP42Q9H9J4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
USP42Q9H9J4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC24.45■■□□□ 1.5
USP42Q9H9J4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC24.45■■□□□ 1.5
USP42Q9H9J4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP42Q9H9J4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC24.45■■□□□ 1.5
USP42Q9H9J4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP42Q9H9J4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP42Q9H9J4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC24.45■■□□□ 1.5
USP42Q9H9J4 AL691432.2-201ENST00000607222 2038 ntBASIC24.45■■□□□ 1.5
USP42Q9H9J4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC24.45■■□□□ 1.5
USP42Q9H9J4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC24.45■■□□□ 1.5
USP42Q9H9J4 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
USP42Q9H9J4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP42Q9H9J4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP42Q9H9J4 AP001271.2-201ENST00000624018 1556 ntBASIC24.44■■□□□ 1.5
USP42Q9H9J4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP42Q9H9J4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP42Q9H9J4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP42Q9H9J4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP42Q9H9J4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC24.44■■□□□ 1.5
USP42Q9H9J4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC24.44■■□□□ 1.5
USP42Q9H9J4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC24.44■■□□□ 1.5
USP42Q9H9J4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC24.44■■□□□ 1.5
USP42Q9H9J4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
USP42Q9H9J4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
USP42Q9H9J4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC24.44■■□□□ 1.5
USP42Q9H9J4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC24.44■■□□□ 1.5
USP42Q9H9J4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP42Q9H9J4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP42Q9H9J4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP42Q9H9J4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC24.43■■□□□ 1.5
USP42Q9H9J4 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC24.43■■□□□ 1.5
USP42Q9H9J4 GCSHP2-201ENST00000560971 527 ntBASIC24.43■■□□□ 1.5
USP42Q9H9J4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP42Q9H9J4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP42Q9H9J4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
USP42Q9H9J4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
USP42Q9H9J4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
USP42Q9H9J4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP42Q9H9J4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
USP42Q9H9J4 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
USP42Q9H9J4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
USP42Q9H9J4 SPDYE15P-201ENST00000424157 909 ntBASIC24.42■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms