Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 TSPY23P-201ENST00000440136 739 ntBASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 AC087388.1-201ENST00000571370 1112 ntBASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
PAAF1Q9BRP4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 TREX1-205ENST00000625293 1783 ntBASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 AC011558.1-201ENST00000623459 338 ntBASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PAAF1Q9BRP4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.52■□□□□ 0.87
PAAF1Q9BRP4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 RNF152P1-201ENST00000397754 604 ntBASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 COX11P1-201ENST00000489116 835 ntBASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PAAF1Q9BRP4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 MIR4674-201ENST00000582457 87 ntBASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.5■□□□□ 0.87
PAAF1Q9BRP4 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms