Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
IFT140Q96RY7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC31.95■■■□□ 2.71
IFT140Q96RY7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
IFT140Q96RY7 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC31.95■■■□□ 2.71
IFT140Q96RY7 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
IFT140Q96RY7 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
IFT140Q96RY7 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC31.95■■■□□ 2.7
IFT140Q96RY7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
IFT140Q96RY7 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC31.95■■■□□ 2.7
IFT140Q96RY7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC31.95■■■□□ 2.7
IFT140Q96RY7 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
IFT140Q96RY7 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC31.95■■■□□ 2.7
IFT140Q96RY7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
IFT140Q96RY7 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
IFT140Q96RY7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
IFT140Q96RY7 ABR-217ENST00000572441 563 ntTSL 4 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 AC099336.1-202ENST00000602961 463 ntBASIC31.94■■■□□ 2.7
IFT140Q96RY7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 AC006128.1-201ENST00000624704 1661 ntBASIC31.94■■■□□ 2.7
IFT140Q96RY7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
IFT140Q96RY7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
IFT140Q96RY7 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC31.93■■■□□ 2.7
IFT140Q96RY7 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
IFT140Q96RY7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
IFT140Q96RY7 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC31.93■■■□□ 2.7
IFT140Q96RY7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC31.93■■■□□ 2.7
IFT140Q96RY7 BET1L-206ENST00000486280 665 ntTSL 3 BASIC31.93■■■□□ 2.7
IFT140Q96RY7 AC092865.5-201ENST00000545435 363 ntBASIC31.93■■■□□ 2.7
IFT140Q96RY7 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC31.93■■■□□ 2.7
IFT140Q96RY7 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC31.93■■■□□ 2.7
IFT140Q96RY7 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC31.93■■■□□ 2.7
IFT140Q96RY7 AL773604.1-201ENST00000617417 272 ntBASIC31.93■■■□□ 2.7
IFT140Q96RY7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC31.93■■■□□ 2.7
IFT140Q96RY7 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC31.93■■■□□ 2.7
IFT140Q96RY7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC31.93■■■□□ 2.7
IFT140Q96RY7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
IFT140Q96RY7 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC31.92■■■□□ 2.7
IFT140Q96RY7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
IFT140Q96RY7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
IFT140Q96RY7 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
IFT140Q96RY7 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC31.92■■■□□ 2.7
IFT140Q96RY7 FEM1AP4-201ENST00000443167 1987 ntBASIC31.91■■■□□ 2.7
IFT140Q96RY7 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
IFT140Q96RY7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
IFT140Q96RY7 HMGN1P19-201ENST00000436976 333 ntBASIC31.91■■■□□ 2.7
IFT140Q96RY7 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC31.91■■■□□ 2.7
IFT140Q96RY7 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
IFT140Q96RY7 MIR3180-5-201ENST00000583743 153 ntBASIC31.91■■■□□ 2.7
IFT140Q96RY7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC31.91■■■□□ 2.7
IFT140Q96RY7 AL390719.2-201ENST00000606993 987 ntBASIC31.91■■■□□ 2.7
IFT140Q96RY7 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
IFT140Q96RY7 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC31.91■■■□□ 2.7
IFT140Q96RY7 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
IFT140Q96RY7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
IFT140Q96RY7 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
IFT140Q96RY7 IGHV3-47-201ENST00000425060 335 ntBASIC31.91■■■□□ 2.7
IFT140Q96RY7 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC31.91■■■□□ 2.7
IFT140Q96RY7 AF238378.1-201ENST00000526806 358 ntBASIC31.91■■■□□ 2.7
IFT140Q96RY7 FICD-205ENST00000552758 603 ntTSL 2 BASIC31.91■■■□□ 2.7
IFT140Q96RY7 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC31.91■■■□□ 2.7
IFT140Q96RY7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
IFT140Q96RY7 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC31.9■■■□□ 2.7
IFT140Q96RY7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
IFT140Q96RY7 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
IFT140Q96RY7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
IFT140Q96RY7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
IFT140Q96RY7 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
IFT140Q96RY7 Z83836.1-201ENST00000624605 1642 ntBASIC31.9■■■□□ 2.7
IFT140Q96RY7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
IFT140Q96RY7 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC31.9■■■□□ 2.7
IFT140Q96RY7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC31.9■■■□□ 2.7
IFT140Q96RY7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
IFT140Q96RY7 MOK-225ENST00000522867 1883 ntTSL 5 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
IFT140Q96RY7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
IFT140Q96RY7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 AC090616.6-201ENST00000582640 721 ntBASIC31.89■■■□□ 2.7
IFT140Q96RY7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC31.89■■■□□ 2.7
IFT140Q96RY7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
IFT140Q96RY7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
IFT140Q96RY7 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
IFT140Q96RY7 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
IFT140Q96RY7 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
IFT140Q96RY7 AL023284.2-201ENST00000405850 579 ntBASIC31.88■■■□□ 2.69
IFT140Q96RY7 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC31.88■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms