Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00477Q96M19 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00477Q96M19 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00477Q96M19 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00477Q96M19 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00477Q96M19 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 GATS-209ENST00000454084 1030 ntTSL 3 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 BET1L-207ENST00000529614 560 ntTSL 5 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00477Q96M19 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00477Q96M19 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LINC00477Q96M19 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC14.4□□□□□ -0.1
LINC00477Q96M19 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 AC124283.5-201ENST00000624661 1809 ntBASIC14.39□□□□□ -0.11
LINC00477Q96M19 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 TUBB8P6-201ENST00000436895 1288 ntBASIC14.39□□□□□ -0.11
LINC00477Q96M19 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 RHEB-204ENST00000472642 900 ntTSL 3 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 AC120498.8-201ENST00000614275 531 ntBASIC14.39□□□□□ -0.11
LINC00477Q96M19 AL121829.2-201ENST00000620908 328 ntBASIC14.39□□□□□ -0.11
LINC00477Q96M19 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 CROCCP3-202ENST00000420820 1947 ntBASIC14.39□□□□□ -0.11
LINC00477Q96M19 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
LINC00477Q96M19 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LINC00477Q96M19 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 PPP1R14BP2-201ENST00000426284 444 ntBASIC14.38□□□□□ -0.11
LINC00477Q96M19 PNN-205ENST00000556530 601 ntTSL 2 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 AC060766.5-201ENST00000590539 871 ntBASIC14.38□□□□□ -0.11
LINC00477Q96M19 PFKL-212ENST00000628044 129 ntTSL 3 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 AC006333.2-201ENST00000607957 2099 ntBASIC14.38□□□□□ -0.11
LINC00477Q96M19 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms