Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC133041.1-202ENST00000642053 222 ntBASIC19.27■□□□□ 0.68
VPS39Q96JC1 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS39Q96JC1 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS39Q96JC1 CROCCP3-202ENST00000420820 1947 ntBASIC19.27■□□□□ 0.67
VPS39Q96JC1 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.67
VPS39Q96JC1 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
VPS39Q96JC1 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS39Q96JC1 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS39Q96JC1 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS39Q96JC1 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS39Q96JC1 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS39Q96JC1 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS39Q96JC1 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS39Q96JC1 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS39Q96JC1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 AL109923.1-201ENST00000618799 583 ntBASIC19.26■□□□□ 0.67
VPS39Q96JC1 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS39Q96JC1 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS39Q96JC1 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VPS39Q96JC1 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS39Q96JC1 AC006333.2-201ENST00000607957 2099 ntBASIC19.26■□□□□ 0.67
VPS39Q96JC1 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS39Q96JC1 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS39Q96JC1 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS39Q96JC1 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 KRT18P16-201ENST00000510337 1294 ntBASIC19.24■□□□□ 0.67
VPS39Q96JC1 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 SOX15-203ENST00000570788 1093 ntBASIC19.24■□□□□ 0.67
VPS39Q96JC1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 AL121829.2-201ENST00000620908 328 ntBASIC19.24■□□□□ 0.67
VPS39Q96JC1 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS39Q96JC1 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS39Q96JC1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.23■□□□□ 0.67
VPS39Q96JC1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms