Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CPNE4Q96A23 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CPNE4Q96A23 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CPNE4Q96A23 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CPNE4Q96A23 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CPNE4Q96A23 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CPNE4Q96A23 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.27■□□□□ 0.35
CPNE4Q96A23 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.27■□□□□ 0.35
CPNE4Q96A23 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 AC004951.3-201ENST00000418645 1148 ntBASIC17.26■□□□□ 0.35
CPNE4Q96A23 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 B3GAT3P1-201ENST00000471720 806 ntBASIC17.26■□□□□ 0.35
CPNE4Q96A23 Z85996.1-201ENST00000494644 937 ntBASIC17.26■□□□□ 0.35
CPNE4Q96A23 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 DGCR10-201ENST00000609839 495 ntBASIC17.26■□□□□ 0.35
CPNE4Q96A23 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 RCC2P6-201ENST00000526625 1557 ntBASIC17.26■□□□□ 0.35
CPNE4Q96A23 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.26■□□□□ 0.35
CPNE4Q96A23 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CPNE4Q96A23 LINC01465-201ENST00000408887 1940 ntBASIC17.25■□□□□ 0.35
CPNE4Q96A23 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CPNE4Q96A23 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPNE4Q96A23 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPNE4Q96A23 UNC93B2-201ENST00000285383 730 ntBASIC17.25■□□□□ 0.35
CPNE4Q96A23 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPNE4Q96A23 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPNE4Q96A23 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPNE4Q96A23 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.25■□□□□ 0.35
CPNE4Q96A23 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPNE4Q96A23 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPNE4Q96A23 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPNE4Q96A23 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 AFG3L1P-217ENST00000557444 2447 ntBASIC17.24■□□□□ 0.35
CPNE4Q96A23 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 AC011298.2-201ENST00000617989 482 ntBASIC17.24■□□□□ 0.35
CPNE4Q96A23 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.24■□□□□ 0.35
CPNE4Q96A23 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPNE4Q96A23 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.23■□□□□ 0.35
CPNE4Q96A23 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CPNE4Q96A23 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPNE4Q96A23 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.23■□□□□ 0.35
CPNE4Q96A23 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CPNE4Q96A23 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.23■□□□□ 0.35
CPNE4Q96A23 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.23■□□□□ 0.35
CPNE4Q96A23 AL355075.4-201ENST00000554988 638 ntBASIC17.23■□□□□ 0.35
CPNE4Q96A23 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.23■□□□□ 0.35
CPNE4Q96A23 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms