Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC4Q92889 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.77■■□□□ 1.08
ERCC4Q92889 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.77■■□□□ 1.08
ERCC4Q92889 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC4Q92889 AL138781.2-201ENST00000617896 1843 ntBASIC21.77■■□□□ 1.08
ERCC4Q92889 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC4Q92889 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC4Q92889 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC4Q92889 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
ERCC4Q92889 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.77■■□□□ 1.07
ERCC4Q92889 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
ERCC4Q92889 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
ERCC4Q92889 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
ERCC4Q92889 AC020763.4-201ENST00000623414 4170 ntBASIC21.77■■□□□ 1.07
ERCC4Q92889 AC104417.2-201ENST00000562989 1793 ntBASIC21.76■■□□□ 1.07
ERCC4Q92889 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.76■■□□□ 1.07
ERCC4Q92889 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.76■■□□□ 1.07
ERCC4Q92889 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.76■■□□□ 1.07
ERCC4Q92889 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
ERCC4Q92889 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.76■■□□□ 1.07
ERCC4Q92889 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
ERCC4Q92889 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.76■■□□□ 1.07
ERCC4Q92889 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.76■■□□□ 1.07
ERCC4Q92889 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.76■■□□□ 1.07
ERCC4Q92889 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
ERCC4Q92889 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.76■■□□□ 1.07
ERCC4Q92889 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.76■■□□□ 1.07
ERCC4Q92889 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
ERCC4Q92889 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ERCC4Q92889 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.76■■□□□ 1.07
ERCC4Q92889 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
ERCC4Q92889 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
ERCC4Q92889 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.75■■□□□ 1.07
ERCC4Q92889 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.75■■□□□ 1.07
ERCC4Q92889 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.75■■□□□ 1.07
ERCC4Q92889 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
ERCC4Q92889 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.75■■□□□ 1.07
ERCC4Q92889 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.75■■□□□ 1.07
ERCC4Q92889 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.75■■□□□ 1.07
ERCC4Q92889 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.75■■□□□ 1.07
ERCC4Q92889 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.75■■□□□ 1.07
ERCC4Q92889 AC092118.2-201ENST00000613495 667 ntBASIC21.75■■□□□ 1.07
ERCC4Q92889 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
ERCC4Q92889 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.75■■□□□ 1.07
ERCC4Q92889 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC21.75■■□□□ 1.07
ERCC4Q92889 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.75■■□□□ 1.07
ERCC4Q92889 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
ERCC4Q92889 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ERCC4Q92889 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.74■■□□□ 1.07
ERCC4Q92889 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.74■■□□□ 1.07
ERCC4Q92889 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.74■■□□□ 1.07
ERCC4Q92889 TSPY6P-201ENST00000448518 926 ntBASIC21.74■■□□□ 1.07
ERCC4Q92889 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.74■■□□□ 1.07
ERCC4Q92889 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
ERCC4Q92889 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.74■■□□□ 1.07
ERCC4Q92889 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
ERCC4Q92889 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
ERCC4Q92889 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.74■■□□□ 1.07
ERCC4Q92889 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ERCC4Q92889 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ERCC4Q92889 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
ERCC4Q92889 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms