Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC009113.1-201ENST00000570267 2443 ntBASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.94■□□□□ 0.78
ATG4AQ8WYN0 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 KRT18P16-201ENST00000510337 1294 ntBASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4AQ8WYN0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4AQ8WYN0 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
ATG4AQ8WYN0 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4AQ8WYN0 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms