Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 AK4P3-201ENST00000418260 669 ntBASIC20.82■□□□□ 0.92
VPS52Q8N1B4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 BX664615.1-201ENST00000443558 458 ntBASIC20.82■□□□□ 0.92
VPS52Q8N1B4 FAM207BP-201ENST00000447172 505 ntBASIC20.82■□□□□ 0.92
VPS52Q8N1B4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS52Q8N1B4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 PCDHAC2-203ENST00000615316 3011 ntBASIC20.81■□□□□ 0.92
VPS52Q8N1B4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS52Q8N1B4 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 HMGA1P5-201ENST00000412453 271 ntBASIC20.8■□□□□ 0.92
VPS52Q8N1B4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 AC116562.4-202ENST00000641738 218 ntBASIC20.8■□□□□ 0.92
VPS52Q8N1B4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 AC096733.2-201ENST00000609937 1394 ntBASIC20.8■□□□□ 0.92
VPS52Q8N1B4 AC099778.1-201ENST00000568593 1911 ntBASIC20.8■□□□□ 0.92
VPS52Q8N1B4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS52Q8N1B4 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.79■□□□□ 0.92
VPS52Q8N1B4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS52Q8N1B4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms