Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 DPP3P2-201ENST00000416030 1696 ntBASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 MESTP1-201ENST00000404287 994 ntBASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 PPP1R14BP5-201ENST00000440334 435 ntBASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 AC073508.3-201ENST00000619697 1419 ntBASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC144BQ3MJ40 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 AL137013.1-201ENST00000432946 1228 ntBASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 SLC25A3P1-201ENST00000443844 931 ntBASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 ABBA01031674.1-201ENST00000635145 728 ntBASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC144BQ3MJ40 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 AC116351.2-201ENST00000606540 1585 ntBASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 FSCN1P1-201ENST00000568912 1481 ntBASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 CFL2-205ENST00000555765 632 ntTSL 2 BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 AL445675.2-201ENST00000620291 557 ntBASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC144BQ3MJ40 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 TFP1-202ENST00000475455 1573 ntBASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CCDC144BQ3MJ40 TREX1-205ENST00000625293 1783 ntBASIC22.27■■□□□ 1.16
CCDC144BQ3MJ40 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms