Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC22.22■■□□□ 1.15
HMGCS2P54868 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC22.22■■□□□ 1.15
HMGCS2P54868 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
HMGCS2P54868 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
HMGCS2P54868 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
HMGCS2P54868 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC22.22■■□□□ 1.15
HMGCS2P54868 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC22.22■■□□□ 1.15
HMGCS2P54868 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
HMGCS2P54868 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 GABARAPL3-202ENST00000624044 1851 ntBASIC22.22■■□□□ 1.15
HMGCS2P54868 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC22.21■■□□□ 1.15
HMGCS2P54868 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC22.21■■□□□ 1.15
HMGCS2P54868 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC22.21■■□□□ 1.15
HMGCS2P54868 CLEC4GP1-201ENST00000596555 870 ntBASIC22.21■■□□□ 1.15
HMGCS2P54868 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 CR769767.2-201ENST00000622735 460 ntBASIC22.21■■□□□ 1.15
HMGCS2P54868 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.21■■□□□ 1.15
HMGCS2P54868 AC099778.1-201ENST00000568593 1911 ntBASIC22.21■■□□□ 1.15
HMGCS2P54868 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
HMGCS2P54868 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC22.21■■□□□ 1.15
HMGCS2P54868 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HMGCS2P54868 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC22.2■■□□□ 1.15
HMGCS2P54868 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.15
HMGCS2P54868 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
HMGCS2P54868 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
HMGCS2P54868 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
HMGCS2P54868 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC22.2■■□□□ 1.14
HMGCS2P54868 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGCS2P54868 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGCS2P54868 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
HMGCS2P54868 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
HMGCS2P54868 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC22.2■■□□□ 1.14
HMGCS2P54868 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC22.2■■□□□ 1.14
HMGCS2P54868 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
HMGCS2P54868 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGCS2P54868 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC22.2■■□□□ 1.14
HMGCS2P54868 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGCS2P54868 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
HMGCS2P54868 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC22.2■■□□□ 1.14
HMGCS2P54868 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC22.2■■□□□ 1.14
HMGCS2P54868 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGCS2P54868 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
HMGCS2P54868 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC22.19■■□□□ 1.14
HMGCS2P54868 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
HMGCS2P54868 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 ILF2-202ENST00000368681 726 ntTSL 2 BASIC22.19■■□□□ 1.14
HMGCS2P54868 GAD2-202ENST00000376248 680 ntTSL 5 BASIC22.19■■□□□ 1.14
HMGCS2P54868 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 AL450487.1-201ENST00000426799 995 ntBASIC22.19■■□□□ 1.14
HMGCS2P54868 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC22.19■■□□□ 1.14
HMGCS2P54868 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC22.19■■□□□ 1.14
HMGCS2P54868 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC22.19■■□□□ 1.14
HMGCS2P54868 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC22.19■■□□□ 1.14
HMGCS2P54868 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGCS2P54868 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.19■■□□□ 1.14
HMGCS2P54868 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 ZNF815P-204ENST00000434898 1737 ntBASIC22.18■■□□□ 1.14
HMGCS2P54868 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
HMGCS2P54868 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC22.18■■□□□ 1.14
HMGCS2P54868 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
HMGCS2P54868 TSPY23P-201ENST00000440136 739 ntBASIC22.18■■□□□ 1.14
HMGCS2P54868 SPDYE13P-201ENST00000445314 798 ntBASIC22.18■■□□□ 1.14
HMGCS2P54868 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
HMGCS2P54868 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC22.18■■□□□ 1.14
HMGCS2P54868 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGCS2P54868 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC22.18■■□□□ 1.14
HMGCS2P54868 FGF14-AS2-201ENST00000606448 1074 ntBASIC22.18■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms