Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.01■□□□□ 0.79
PTPN9P43378 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.01■□□□□ 0.79
PTPN9P43378 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20■□□□□ 0.79
PTPN9P43378 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
PTPN9P43378 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20■□□□□ 0.79
PTPN9P43378 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 AL161938.1-201ENST00000569833 2180 ntBASIC20■□□□□ 0.79
PTPN9P43378 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20■□□□□ 0.79
PTPN9P43378 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
PTPN9P43378 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20■□□□□ 0.79
PTPN9P43378 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20■□□□□ 0.79
PTPN9P43378 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20■□□□□ 0.79
PTPN9P43378 CD177P1-201ENST00000606252 935 ntBASIC20■□□□□ 0.79
PTPN9P43378 AP001412.1-201ENST00000608405 714 ntBASIC20■□□□□ 0.79
PTPN9P43378 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20■□□□□ 0.79
PTPN9P43378 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20■□□□□ 0.79
PTPN9P43378 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20■□□□□ 0.79
PTPN9P43378 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTPN9P43378 RCC2P6-201ENST00000526625 1557 ntBASIC20■□□□□ 0.79
PTPN9P43378 IRX1P1-201ENST00000438849 1838 ntBASIC19.99■□□□□ 0.79
PTPN9P43378 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN9P43378 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN9P43378 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN9P43378 FP475955.4-201ENST00000623131 1990 ntBASIC19.99■□□□□ 0.79
PTPN9P43378 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN9P43378 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.99■□□□□ 0.79
PTPN9P43378 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
PTPN9P43378 FAM197Y1-201ENST00000421178 764 ntBASIC19.99■□□□□ 0.79
PTPN9P43378 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN9P43378 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN9P43378 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.99■□□□□ 0.79
PTPN9P43378 AL049637.2-201ENST00000641778 930 ntBASIC19.99■□□□□ 0.79
PTPN9P43378 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN9P43378 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN9P43378 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN9P43378 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN9P43378 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN9P43378 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTPN9P43378 FEM1AP3-201ENST00000403722 1741 ntBASIC19.99■□□□□ 0.79
PTPN9P43378 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
PTPN9P43378 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.98■□□□□ 0.79
PTPN9P43378 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
PTPN9P43378 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.98■□□□□ 0.79
PTPN9P43378 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.98■□□□□ 0.79
PTPN9P43378 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.98■□□□□ 0.79
PTPN9P43378 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.98■□□□□ 0.79
PTPN9P43378 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.98■□□□□ 0.79
PTPN9P43378 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.98■□□□□ 0.79
PTPN9P43378 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.98■□□□□ 0.79
PTPN9P43378 AC113410.3-201ENST00000623366 203 ntBASIC19.98■□□□□ 0.79
PTPN9P43378 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.98■□□□□ 0.79
PTPN9P43378 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.98■□□□□ 0.79
PTPN9P43378 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
PTPN9P43378 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.98■□□□□ 0.79
PTPN9P43378 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.98■□□□□ 0.79
PTPN9P43378 AC018445.3-201ENST00000624177 1945 ntBASIC19.98■□□□□ 0.79
PTPN9P43378 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
PTPN9P43378 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTPN9P43378 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.97■□□□□ 0.79
PTPN9P43378 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN9P43378 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.97■□□□□ 0.79
PTPN9P43378 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.97■□□□□ 0.79
PTPN9P43378 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.97■□□□□ 0.79
PTPN9P43378 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN9P43378 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN9P43378 AC004951.3-201ENST00000418645 1148 ntBASIC19.97■□□□□ 0.79
PTPN9P43378 AC091390.4-202ENST00000476426 537 ntBASIC19.97■□□□□ 0.79
PTPN9P43378 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.97■□□□□ 0.79
PTPN9P43378 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.97■□□□□ 0.79
PTPN9P43378 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.97■□□□□ 0.79
PTPN9P43378 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
PTPN9P43378 Z99916.2-201ENST00000604037 246 ntBASIC19.97■□□□□ 0.79
PTPN9P43378 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN9P43378 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN9P43378 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.97■□□□□ 0.79
PTPN9P43378 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN9P43378 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
PTPN9P43378 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN9P43378 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTPN9P43378 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms