Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC32.3■■■□□ 2.76
CUX1P39880 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC32.3■■■□□ 2.76
CUX1P39880 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC32.3■■■□□ 2.76
CUX1P39880 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC32.3■■■□□ 2.76
CUX1P39880 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CUX1P39880 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CUX1P39880 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC32.3■■■□□ 2.76
CUX1P39880 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC32.3■■■□□ 2.76
CUX1P39880 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CUX1P39880 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
CUX1P39880 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
CUX1P39880 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC32.29■■■□□ 2.76
CUX1P39880 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CUX1P39880 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC32.29■■■□□ 2.76
CUX1P39880 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CUX1P39880 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC32.29■■■□□ 2.76
CUX1P39880 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC32.29■■■□□ 2.76
CUX1P39880 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC32.29■■■□□ 2.76
CUX1P39880 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC32.29■■■□□ 2.76
CUX1P39880 HLA-F-220ENST00000434407 884 ntBASIC32.29■■■□□ 2.76
CUX1P39880 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC32.29■■■□□ 2.76
CUX1P39880 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC32.29■■■□□ 2.76
CUX1P39880 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC32.29■■■□□ 2.76
CUX1P39880 AL121672.3-201ENST00000608644 468 ntBASIC32.29■■■□□ 2.76
CUX1P39880 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC32.29■■■□□ 2.76
CUX1P39880 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC32.29■■■□□ 2.76
CUX1P39880 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CUX1P39880 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CUX1P39880 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CUX1P39880 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CUX1P39880 GAD2-202ENST00000376248 680 ntTSL 5 BASIC32.28■■■□□ 2.76
CUX1P39880 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC32.28■■■□□ 2.76
CUX1P39880 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC32.28■■■□□ 2.76
CUX1P39880 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC32.28■■■□□ 2.76
CUX1P39880 AP002414.4-201ENST00000589764 1148 ntBASIC32.28■■■□□ 2.76
CUX1P39880 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC32.28■■■□□ 2.76
CUX1P39880 AL162377.1-201ENST00000618844 1793 ntBASIC32.28■■■□□ 2.76
CUX1P39880 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CUX1P39880 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CUX1P39880 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC32.28■■■□□ 2.76
CUX1P39880 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
CUX1P39880 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC32.27■■■□□ 2.76
CUX1P39880 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
CUX1P39880 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC32.27■■■□□ 2.76
CUX1P39880 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC32.27■■■□□ 2.76
CUX1P39880 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC32.27■■■□□ 2.76
CUX1P39880 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC32.27■■■□□ 2.76
CUX1P39880 AC011498.5-201ENST00000592027 486 ntBASIC32.27■■■□□ 2.76
CUX1P39880 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
CUX1P39880 AL031008.1-201ENST00000619963 541 ntBASIC32.27■■■□□ 2.76
CUX1P39880 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CUX1P39880 AL162741.1-201ENST00000565563 1558 ntBASIC32.27■■■□□ 2.76
CUX1P39880 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
CUX1P39880 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CUX1P39880 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC32.26■■■□□ 2.76
CUX1P39880 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC32.26■■■□□ 2.76
CUX1P39880 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC32.26■■■□□ 2.76
CUX1P39880 TPSP2-201ENST00000561760 610 ntBASIC32.26■■■□□ 2.76
CUX1P39880 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC32.26■■■□□ 2.76
CUX1P39880 AL732292.2-201ENST00000609649 430 ntBASIC32.26■■■□□ 2.76
CUX1P39880 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC32.26■■■□□ 2.75
CUX1P39880 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CUX1P39880 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CUX1P39880 AC004870.1-201ENST00000315132 882 ntBASIC32.26■■■□□ 2.75
CUX1P39880 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CUX1P39880 AL845331.1-201ENST00000424978 1190 ntBASIC32.26■■■□□ 2.75
CUX1P39880 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC32.26■■■□□ 2.75
CUX1P39880 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC32.25■■■□□ 2.75
CUX1P39880 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC32.25■■■□□ 2.75
CUX1P39880 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CUX1P39880 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CUX1P39880 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC32.25■■■□□ 2.75
CUX1P39880 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC32.25■■■□□ 2.75
CUX1P39880 AC009078.2-202ENST00000463353 338 ntBASIC32.25■■■□□ 2.75
CUX1P39880 AC024243.1-201ENST00000609234 778 ntBASIC32.25■■■□□ 2.75
CUX1P39880 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC32.25■■■□□ 2.75
CUX1P39880 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC32.25■■■□□ 2.75
CUX1P39880 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
CUX1P39880 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC32.24■■■□□ 2.75
CUX1P39880 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
CUX1P39880 BX276092.5-203ENST00000456199 560 ntBASIC32.24■■■□□ 2.75
CUX1P39880 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC32.24■■■□□ 2.75
CUX1P39880 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC32.24■■■□□ 2.75
CUX1P39880 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC32.24■■■□□ 2.75
CUX1P39880 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC32.24■■■□□ 2.75
CUX1P39880 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
CUX1P39880 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
CUX1P39880 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
CUX1P39880 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CUX1P39880 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CUX1P39880 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC32.23■■■□□ 2.75
CUX1P39880 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CUX1P39880 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC32.23■■■□□ 2.75
CUX1P39880 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CUX1P39880 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC32.23■■■□□ 2.75
CUX1P39880 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CUX1P39880 TBCB-205ENST00000585746 875 ntTSL 3 BASIC32.23■■■□□ 2.75
CUX1P39880 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CUX1P39880 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CUX1P39880 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms