Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD3P31249 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD3P31249 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD3P31249 CRAT-202ENST00000393384 973 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXD3P31249 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
HOXD3P31249 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXD3P31249 PPP1R14BP5-201ENST00000440334 435 ntBASIC14.88□□□□□ -0.03
HOXD3P31249 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD3P31249 CFL2-205ENST00000555765 632 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXD3P31249 AC026271.3-201ENST00000571884 352 ntBASIC14.88□□□□□ -0.03
HOXD3P31249 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD3P31249 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC14.88□□□□□ -0.03
HOXD3P31249 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXD3P31249 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD3P31249 AC073130.3-201ENST00000624389 2278 ntBASIC14.88□□□□□ -0.03
HOXD3P31249 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXD3P31249 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC14.88□□□□□ -0.03
HOXD3P31249 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD3P31249 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD3P31249 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HOXD3P31249 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC14.88□□□□□ -0.03
HOXD3P31249 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HOXD3P31249 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD3P31249 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HOXD3P31249 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HOXD3P31249 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HOXD3P31249 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD3P31249 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC14.87□□□□□ -0.03
HOXD3P31249 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD3P31249 AC004980.1-204ENST00000429707 299 ntBASIC14.87□□□□□ -0.03
HOXD3P31249 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
HOXD3P31249 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD3P31249 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC14.87□□□□□ -0.03
HOXD3P31249 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HOXD3P31249 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD3P31249 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXD3P31249 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC14.87□□□□□ -0.03
HOXD3P31249 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HOXD3P31249 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HOXD3P31249 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXD3P31249 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.87□□□□□ -0.03
HOXD3P31249 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HOXD3P31249 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
HOXD3P31249 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 LIN28AP1-201ENST00000429574 405 ntBASIC14.86□□□□□ -0.03
HOXD3P31249 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 ATP5G1P1-201ENST00000448724 379 ntBASIC14.86□□□□□ -0.03
HOXD3P31249 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC14.86□□□□□ -0.03
HOXD3P31249 NME3-204ENST00000563498 920 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 ABBA01031674.1-201ENST00000635145 728 ntBASIC14.86□□□□□ -0.03
HOXD3P31249 CLN6-221ENST00000637494 765 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXD3P31249 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXD3P31249 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
HOXD3P31249 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXD3P31249 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
HOXD3P31249 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXD3P31249 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXD3P31249 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXD3P31249 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.85□□□□□ -0.03
HOXD3P31249 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC14.85□□□□□ -0.03
HOXD3P31249 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXD3P31249 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXD3P31249 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC14.85□□□□□ -0.03
HOXD3P31249 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXD3P31249 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXD3P31249 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
HOXD3P31249 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms